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Year is 2007 or after. Results ordered by year (most recent first).
Displaying results 1 to 48 of 48. Search time: 0s.
[Index last built at: Sun Aug 5 11:30:37 PDT 2012]

(2012) A lightweight freezer management system for small laboratories. AMIA Spring Summit on Clinical Informatics(p 164), San Francisco.

Brinkley, James F. and Detwiler, Landon T. (2012) A Query Integrator and Manager for the Query Web. Journal of Biomedical Informatics In Press.

Shaker, Ronald and Hertzenberg, Xenia and Brinkley, James (2012) Lightweight Data Integration Frameworks for Clinical Research. In Proceedings, 2012 AMIA Summit on Clinical Research Informatics, Parc 55 Hotel San Francisco, CA.

Detwiler, Landon T and Brinkley, James F (2011) Value Sets via Ontology Views. In Proceedings, Clinical Research Informatics Summit of the American Medical Informatics Association, pages 100, San Francisco, CA.

Franklin, Joshua D and Guidry, Alicia F and Brinkley, James F (2011) A Partnership Approach for Electronic Data Capture in Small-Scale Clinical Trials. In Proceedings, Clinical Research Informatics Summit of the American Medical Informatics Association, pages 10, San Francisco, CA.

Nichols, Nolan and Detwiler, Landon T and Franklin, Joshua D and Brinkley, James F (2011) Distributed Queries for Quality Control Checks in Clinical Trials. In Proceedings, Clinical Research Informatics Summit of the American Medical Informatics Association, pages 115, San Francisco, CA.

Shaw, Marianne and Detwiler, Landon T and Noy, N. F. and Brinkley, James F and Suciu, Dan (2011) vSPARQL: A View Definition Language for the Semantic Web. Journal of Biomedical Informatics 44(1):pp. 102-117.

Wynden, Rob and Solbrig, Harold and Tu, Samson and Brinkley, James F (2011) The Value of Value Sets. In Proceedings, Clinical Research Informatics Summit of the American Medical Informatics Association, pages pp. 162-163, San Francisco, CA.

Brinkley, James F and Turner, Jessica A and Detwiler, Landon T and Mejino, Jose L V and Martone, Maryanne E and Rubin, Daniel L (2010) Intelligent Queries over BIRN Data using the Foundational Model of Anatomy and a Distributed Query-Based Data Integration System. In Proceedings, Annual Symposium of the American Medical Informatics Association, pages 989, Washington, DC.

Dell, Nicola (2010) VIQUEN: A visual query engine for RDF. Technical Report, Computer Science and Engineering, University of Washington.

Detwiler, Landon T and Shaw, Marianne and Brinkley, James F (2010) Ontology View Query Management. In Proceedings, Annual Symposium of the American Medical Informatics Association, pages 1023, Washington, DC.

Mejino, Jose L V and Detwiler, Landon T and Turner, Jessica A and Martone, Maryann E and Rubin, Daniel L and Brinkley, James F (2010) Enabling RadLex with the Foundational Model of Anatomy Ontology to Organize and Integrate Neuro-imaging Data. In Proceedings, Annual Symposium of the American Medical Informatics Association, pages 1171, Washington, DC.

Nichols, Nolan and Perlmutter, Aaron and Mejino, Jose L V and Brinkley, James F (2010) Representing Neural Connectivity in the Foundational Model of Anatomy Ontology. In Proceedings, Annual Symposium of the American Medical Informatics Association, Washington, DC.

Oldenkamp, Paul (2010) Guide to Low Cost Electronic Data Capture Systems for Clinical Trials. Technical Report, Center for Clinical and Translational Research, Seattle Children's Research Institute.

Shen, Terry H and Detwiler, Landon T and Tarczy-Hornoch, Peter and Cadag, Eithon and Carlson, Christopher S (2010) Evaluation of probabilistic and logical inference for a SNP annotation system. Journal of Biomedical Informatics 43(3):pp. 407-418.

Turner, Jessica A and Mejino, Jose L V and Brinkley, James F and Detwiler, Landon T and Lee, Hyo Jong and Martone, Maryann E and Rubin, Daniel L (2010) Application of neuroanatomical ontologies for neuroimaging data annotation. Frontiers in Neuroinformatics 4(10):pp. 1-12.

Cook, Daniel L and Mejino, Jose L V and Neal, Maxwell L and Gennari, John H (2009) Composite annotations: requirements for mapping multiscale data and models to biomedical ontologies. In Proceedings, Engineering in Medicine and Biology Conference, Montreal.

Detwiler, Landon T and Gatterbauer, Wolfgang and Louie, Brenton and Suciu, Dan and Tarczy-Hornoch, Peter (2009) Integrating and Ranking Uncertain Scientific Data. In Proceedings, International Conference on Data Engineering, Shanghai, China.

Detwiler, Landon T and Shaw, Marianne and Cook, Daniel L and Gennari, John H and Brinkley, James F (2009) Post-Coordinating Orthogonal Ontologies for Data Annotation. In Proceedings, Annual Symposium of the American Medical Informatics Association, pages 815, San Fransisco, CA.

Detwiler, Landon T and Suciu, Dan and Franklin, Joshua D and Moore, Eider B and Poliakov, Andrew W and Lee, E Sally and Corina, David P and Ojemann, George A and Brinkley, James F (2009) Distributed XQuery-based integration and visualization of multimodality data: Application to brain mapping. . Frontiers in Neuroinformatics.

Franklin, Joshua D and Detwiler, Landon T and Brinkley, James F (2009) Lightweight distributed XML-based integration of translational data. In Proceedings, Annual Symposium of the American Medical Informatics Association, pages 847, San Fransisco, CA.

Gennari, John H and Neal, Maxwell L and Mejino, Jose L V and Cook, Daniel L (2009) Using multiple reference ontologies: Managing composite annotations. In Proceedings, International Conference on Biomedical Ontology, pages pp. 83-86, Buffalo, N.Y..

Gu, Huanying and Wei, Duo and Mejino, Jose L V and Elhanan, Gai (2009) Relationship auditing of the FMA ontology. Journal of Biomedical Informatics 42(3):pp. 540-549.

Kalet, Ira J (2009) Principles of Biomedical Informatics. Academic Press.

Kalet, Ira and Mejino, Jose L V and Wang, Vania and Whipple, Mark and Brinkley, James F (2009) Content-specific auditing of a large scale anatomy ontology. Journal of Biomedical Informatics 42(3):pp. 540-549.

Neal, Maxwell L and Gennari, John H and Arts, Theo and Cook, Daniel L (2009) Advances in semantic representation for multiscale biosimulation: a case study in merging models. In Proceedings, Pacific Symposium on Biocomputing, pages pp. 304-315.

Cook, Daniel L and Mejino, Jose L V and Neal, Maxwell L and Gennari, John H (2008) Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 136-140, Washington, DC.

Detwiler, Landon T and Suciu, Dan and Brinkley, James F (2008) Regular Paths in SparQL: Querying the NCI Thesaurus. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 161-165, Washington, DC.

Franklin, Joshua D and Mejino, Jose L V and Detwiler, Landon T and Rubin, Daniel L and Brinkley, James F (2008) Web Service Access to Semantic Web Ontologies for Data Annotation. In Proceedings, American Medical Informatics Association Fall Symposium, pages 946, Washington, DC.

Guidry, Alicia F and Brinkley, James F and Anderson, Nicholas R and Tarczy-Hornoch, Peter (2008) Concept Mapping to Develop a Framework for Characterizing Electronic Data Capture (EDC) Systems. In Proceedings, American Medical Informatics Association Fall Symposium, pages 960, Washington, DC.

John H, Gennari and Maxwell L, Neal and Brian E, Carlson and Daniel L, Cook (2008) Integration of multi-scale biosimulation models via light-weight semantics. In Proceedings, Pacific Symposium on Biocomputing, Hawaii.

Mejino, Jose L V and Rubin, Daniel L and Brinkley, James F (2008) FMA-RadLex: An Application Ontology of Radiological Anatomy derived from the Foundational Model of Anatomy Reference Ontology. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 465-469, Washington, DC.

Poliakov, Andrew V and X., Hertzenberg and Moore, Eider B and Corina, David P and Ojemann, George A and Brinkley, James F (2008) Unobtrusive Integration of Data Management With fMRI Analysis. NeuroInformatics 5(1):pp. 3-10.

Puget, Antoine (2008) Spatial-Symbolic Query Engine in Anatomy. MS Thesis, Computer and Systems Sciences, Royal Institute of Technology, Stockholm, Sweden.

Shaw, Marianne and Detwiler, Landon T and Brinkley, James F and Suciu, Dan and Mejino, Jose L V (2008) Generating Application Ontologies from Reference Ontologies. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 672-676, Washington, DC.

Anderson, Nicholas R and Lee, E. Sally and Brockenbrough, J Scott and Minie, Mark E and Fuller, Sherrilynne and Brinkley, James F and Tarczy-Hornoch, Peter (2007) Issues in biomedical research data management and analysis: needs and barriers. Journal of the American Medical Informatics Association 14:pp. 478-488.

Brinkley, James F and Ach, Daniel and Franklin, Joshua D and Anderson, Nicholas R and Stevens, Anne and Tarczy-Hornoch, Peter (2007) Tools for Clinical Trials Management: Handling the Norm and the Outliers. In Proceedings, American Medical Informatics Association Fall Symposium, pages 5, Chicago, IL. From Clinical Research Informatics Expo.

Detwiler, Landon T and Brinkley, James F (2007) Querying Non-Materialized Ontology Views. In Proceedings, American Medical Informatics Association Fall Symposium, Chicago, IL.

Li, Xiang and Gennari, John H and Brinkley, James F (2007) XGI: A Graphical Interface for XQuery Creation. In Proceedings, American Medical Informatics Association Fall Symposium, Chicago, IL.

Louie, Brenton and Detwiler, Landon T and Dalvi, Nilesh and Shaker, Ron and Tarczy-Hornoch, Peter and Suciu, Dan (2007) Incorporating Uncertainty Metrics into a General-Purpose Data Integration System. In Proceedings, SSDBM (Scientific and Statistical Database Management).

Mejino, Jose L V and Martin, Richard F and Detwiler, Landon T and Brinkley, James F (2007) Challenges in Reconciling Different Views of Neuroanatomy in a Reference Ontology of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, Chicago, IL.

Moore, Eider B and Poliakov, Andrew V and Lincoln, Peter and Brinkley, James F (2007) MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data. BMC Bioinformatics 8:389.

Poliakov, Andrew V and McLaughlin, Judy and Valentine, Geoffry and Pitkanen, Ilona and Osterhout, Lee (2007) Intrinsic Variability of GM Density Maps and its Implications to VBM Studies. In Proceedings, Human Brain Mapping, Chicago, IL.

Rolfe, Sara (2007) An Independent Component Analysis Based Tool for Exploring Functional Connections in the Brain. Masters Thesis, Electrical Engineering, University of Washington.

Rosse, Cornelius and Mejino, Jose L V (2007) The Foundational Model of Anatomy Ontology, in Burger, A and Davidson, D and Baldock, R, Eds. Anatomy Ontologies for Bioinformatics: Principles and Practice, pages pp. 59-117. Springer.

Smith, Barry and Ashburner, Michael and Rosse, Cornelius and Bard, Jonathan and Bug, William and Ceusters, Werner and Goldberg, Louis J and Eilbeck, Karen and Ireland, Amelia and Mungall, Christopher J and OBI Consortium, The and Leontis, Neocles and Rocca‐Serra, a b and Ruttenberg, Alan and Sansone, Susanna-Assunta and Shah, Migam and Whetzel, Patricia L and Lewissi, Suzanna (2007) The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration. Nature Biotechnology 25(11):pp. 1251-1255. doi:10.1038/nbt1346.

Yngve, Gary (2007) Visualization for Biological Models, Simulation, and Ontologies . PhD thesis, Computer Science and Engineering, University of Washington.

Yngve, Gary and Brinkley, James F and Cook, Daniel L and Shapiro, Linda G (2007) A Model Browser for Biosimulation. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 836-840, Chicago, IL.

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