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Items submitted by Hinshaw, Kevin

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Number of items submitted by this user: 150

Agoncillo, Augusto V and Mejino, Jose L V and Rosse, Cornelius (1999) Influence of the Digital Anatomist Foundational Model on Traditional Representations of Anatomical Concepts. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 2-6.

Altman, R. B. and Brinkley, James F (1993) Probabilistic Constraint Satisfaction with Structural Models: Application to Organ Modelling by Radial Contours. In Proceedings, 17th Symposium on Computer Applications in Medical Care, pages pp. 492-497.

Bowden, D. M. and Robertson, J. E. and Martin, Richard F and Dubach, M. F. and Wu, J. S. and McLean, M. R. and Brinkley, James F (1999) Web-Tools for Neuroscience Based on Neuronames, a Template Brain Atlas, Edgewarp and Geographic Information Systems Software. In Proceedings, Fifth International Conference on Functional Mapping of the Human Brain.

Bradley, S. W. and Rosse, Cornelius and Brinkley, James F (1995) Web-Based Access to an Online Atlas of Anatomy: The Digital Anatomist Common Gateway Interface. In Proceedings, 19th Symposium on Computer Applications in Medical Care, pages pp. 512-516.

Brinkley, James F (1988) Representing Biologic Objects as Geometric Constraint Networks. In Proceedings, AAAI Spring Symposium Series: Artificial Intelligence in Medicine, pages pp. 7-8.

Brinkley, James F (1991) Structural Informatics and Its Applications in Medicine and Biology. Academic Medicine 66(10):pp. 589-591.

Brinkley, James F (1992) Hierarchical Geometric Constraint Networks as a Representation for Spatial Structural Knowledge. In Proceedings, 16th Annual Symposium on Computer Applications in Medical Care, pages pp. 140-144.

Brinkley, James F (1993) A Flexible, Generic Model for Anatomic Shape: Application to Interactive Two-Dimensional Medical Image Segmentation and Matching. Computers and Biomedical Research 26:pp. 121-142.

Brinkley, James F (1993) The Potential for Three-Dimensional Ultrasound. In Chervenak, F. A. and Isaacson, G. C. and Campbell, S., Eds. Proceedings, Ultrasound in Obstetrics and Gynecology.

Brinkley, James F (1994) A Distributed, Object-Oriented Framework for Medical Image Management and Analysis: Application to Evaluation of Medical Image Segmentation Techniques. In Proceedings, IEEE Workshop on Biomedical Image Analysis, pages pp. 194-203.

Brinkley, James F (1994) Educational Systems:Synopsis. In Bemmel, J. H. Van and McCray, A. T., Eds. Proceedings, Yearbook of Medical Informatics, pages pp. 465-467.

Brinkley, James F (1994) The Digital Anatomist Project. In Proceedings, Annual Meeting, pages 6.

Brinkley, James F (1998) The Use of Anatomical Knowledge in Medical Imaging: An Overview of the University of Washington Structural Informatics Group. In Wong, S., Eds. Proceedings, Advances in Biomedical Image Databases, pages pp. 89-116.

Brinkley, James F and Albright, Evan M and Kim, S. and Mejino, Jose L V and Shapiro, Linda G and Rosse, Cornelius (2000) Visible Human, Construct Thyself: The Digital Anatomist Dynamic Scene Generator. In Proceedings, Visible Human Project Conference 2000, pages pp. 27-28.

Brinkley, James F and Altman, R. B. and Duncan, B. S. and Buchanan, B. G. and Jardetzky, O. (1988) Heuristic Refinement Method for the Derivation of Protein Solution Structures: Validation on Cytochrome B562. J. Chem. Inf. Comput. Sci. 28(4):pp. 194-210.

Brinkley, James F and Bradley, S. W. and Sundsten, John W and Rosse, Cornelius (1997) The Digital Anatomist Information System and Its Use in the Generation and Delivery of Web-Based Anatomy Atlases. Computers and Biomedical Research 30:pp. 472-503.

Brinkley, James F and Eno, Kraig R and Sundsten, John W (1993) Knowledge-Based Client-Server Approach to Structural Information Retrieval: The Digital Anatomist Browser. Computer Methods and Programs in Biomedicine 40:pp. 131-145.

Brinkley, James F and Eno, Kraig R and Sundsten, John W and Conley, D. M. and Rosse, Cornelius (1995) A Distributed Framework for Distance Learning in Anatomy: The Digital Anatomist Interactive Atlas. In Proceedings, 19th Symposium on Computer Applications in Medical Care, pages 972.

Brinkley, James F and Myers, L. M. and Prothero, J. S. and Heil, G. H. and Tsuruda, J. S. and Maravilla, K. R. and Ojemann, George A and Rosse, Cornelius (1997) A Structural Information Framework for Brain Mapping. In Koslow, S. H. and Huerta, M. F., Eds. Proceedings, Neuroinformatics: An Overview of the Human Brain Project, pages pp. 309-334.

Brinkley, James F and Prothero, J. S. (1997) Slisp: A Flexible Software Toolkit for Hybrid, Embedded and Distributed Applications. Software -- Practice and Experience 27(1):pp. 33-48.

Brinkley, James F and Prothero, J. S. and Prothero, John W and Rosse, Cornelius (1989) A Framework for the Design of Knowledge-Based Systems in Structural Biology. In Proceedings, 15th Annual Symposium on Computer Applications in Medical Care, pages pp. 61-65.

Brinkley, James F and Rosse, Cornelius (1997) The Digital Anatomist Distributed Framework and Its Applications to Knowledge Based Medical Imaging. Journal of the American Medical Informatics Association 4(3):pp. 165-183. Also published in van Bemmel, J.H. and McCray, A.T. (eds.) Yearbook of Medical Informatics 98, pp 119-137, 1998.

Brinkley, James F and Rosse, Cornelius (1998) Requirements for an on-Line Knowledge-Based Anatomy Information System. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 892-896, Orlando, Florida.

Brinkley, James F and Wong, B. A. and Hinshaw, Kevin P and Rosse, Cornelius (1999) Design of an Anatomy Information System. Computer Graphics and Applications 19(3):pp. 38-48. Invited paper.

Conley, D. and Rosse, Cornelius (1994) Interactive Atlas of Thoracic Viscera.

Conley, D. and Rosse, Cornelius (1994) Animations of Thoracic Viscera.

Conley, D. M. and Brinkley, James F and Rauschning, Wolfgang and Rosse, Cornelius (1993) A Multimedia Approach to the Study of the Mediastinum Utilizing a Computer-Generated Three-Dimensional Model. In Proceedings, Annual Meeting.

Conley, D. M. and Kastella, K. G. and Sundsten, John W and Rauschning, Wolfgang and Rosse, Cornelius (1992) Computer-Generated Three-Dimensional Reconstruction of the Mediastinum Correlated with Sectional and Radiological Anatomy. Clinical Anatomy 5:pp. 185-202.

Conley, D. M. and Sundsten, John W and Ratiu, P. and Rauschning, Wolfgang and Rosse, Cornelius (1995) The Digital Anatomist Series: 3-D, Segmented, Dynamic Atlases of Body Regions. In Proceedings, 19th Symposium on Computer Applications in Medical Care, pages 1016.

Corina, David P and McBurney, S. L. and Dodrill, C. and Hinshaw, Kevin P and Brinkley, James F and Ojemann, George A (1999) Functional Roles of Broca's Area and SMG: Evidence from Cortical Stimulation Mapping in a Deaf Signer. Neuroimage 10(5):pp. 570-581.

Corina, David P and McBurney, S. L. and Hinshaw, Kevin P and Brinkley, James F and Lettich, E. and Ojemann, George A (1998) Left Hemisphere Specialization for American Sign Language: A Cortical Stimulation Study. In Proceedings, Abstracts, Society for Neuroscience Annual Meeting, pages 15.4.

Corina, David P and Poliakov, Andrew V and Steury, K. and Martin, Richard F and Brinkley, James F and Mulligan, K. A. and Ojemann, George A (2000) Correspondences between Language Cortex Identified by Cortical Stimulation Mapping and FMRI. In Proceedings, Neuroimage, Human Brain Mapping Annual Meeting 11(5), pages S295.

Corina, David P and Steury, K. and Poliakov, Andrew V and Martin, Richard F and Mulligan, K. A. and Maravilla, K. and Lettich, E. and Brinkley, James F and Inuoe, K. and Ojemann, George A (2001) A Comparison of Language Function Derived from Cortical Stimulation Mapping and FMRI: Data from Object Naming. Submitted.

Corina, David P and Steury, K. R. and Mulligan, K. A. and Hinshaw, Kevin P and Poliakov, Andrew V and Brinkley, James F and Maravilla, K. R. and Ojemann, George A (1999) A Comparison of Language Cortex Indentified by Cortical Stimulation Mapping and FMRI Techniques. In Proceedings, Abstracts, Society for Neuroscience Annual Meeting, pages 654.2.

Dailey, D. J. and Brinkley, James F (1996) A Metric for Quantifying Response Time in a Browser Application. IEEE Trans. Systems, Man and Cybernetics, Part A (Systems and Humans) 26(2):pp. 271-275.

Dailey, D. J. and Eno, Kraig R and Brinkley, James F (1994) Performance Evaluation of a Distance Learning Program. In Proceedings, 18th Annual Symposium on Computer Applications in Medical Care, pages pp. 76-80.

Dailey, D. J. and Eno, Kraig R and Zick, G. L. and Brinkley, James F (1993) A Network Model for Wide Area Access to Structural Information. In Proceedings, 17th Symposium on Computer Applications in Medical Care, pages pp. 497-501.

DeVito, J. L. and Graham, J. and Schultz, G. and Sundsten, John W and Prothero, John W (1986) Morphometry of the Developing Brain in Macaca Nemestrina. In Else, J. G. and Lee, P., Eds. Proceedings, Ontogeny, Cognition and Social Behaviour of Primates, pages pp. 131-139.

Eno, Kraig R and Sundsten, John W and Brinkley, James F (1991) A Multimedia Anatomy Browser Incorporating a Knowledge Base and 3-D Images. In Proceedings, Symposium on Computer Applications in Medical Care, pages pp. 727-731.

Graney, D. and Conley, D. and Sundsten, John W and Ratiu, P. and Rauschning, Wolfgang and Brinkley, James F and Rosse, Cornelius (1995) Digital Anatomist Interactive Atlases. Journal of Clinical Anatomy 17(3):213. Abstracts of 3rd European Congress of the European Association of Clinical Anatomy.

Greenes, R. G. and Brinkley, James F (1990) Radiology Applications. In Shortliffe, E. H. and Perreault, L. E. and Wiederhold, G. and Fagan, L. M., Eds. Proceedings, Medical Informatics: Computer Applications in Health Care, pages pp. 324-365.

Hahn, J. S. and Burnside, E. and Brinkley, James F and Rosse, Cornelius and Musen, M. A. (1999) Representing the Digital Anatomist Foundational Model as a Protege Ontology. In Proceedings, American Medical Informatics Association Fall Symposium, pages 1070.

Hinshaw, Kevin P and Altman, R. B. and Brinkley, James F (1995) Shape-Based Models for Interactive Segmentation of Medical Images. In Loew, M. H., Eds. Proceedings, SPIE Medical Imaging 1995: Image Processing 2434, pages pp. 771-780, San Diego, California.

Hinshaw, Kevin P and Brinkley, James F (1997) Shape-Based Interactive Three-Dimensional Medical Image Segmentation. In Hanson, K. M., Eds. Proceedings, SPIE Medical Imaging: Image Processing 3034, pages pp. 236-242.

Hinshaw, Kevin P and Brinkley, James F (1997) Using 3-D Shape Models to Guide Segmentation of MR Brain Images. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 469-473. Awarded second place, student paper competition.

Hinshaw, Kevin P and Brinkley, James F (1998) Incorporating Constraint-Based Shape Models into an Interactive System for Functional Brain Mapping. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 921-925.

Hinshaw, Kevin P and Poliakov, Andrew V and Martin, Richard F and Moore, Eider B and Shapiro, Linda G and Brinkley, James F (2002) Shape-Based Cortical Surface Segmentation for Visualization Brain Mapping. Neuroimage 16(2):pp. 295-316.

Jakobovits, Rex M (2000) WIRM: A Perl-Based Application Server. Web Techniques:pp. 97-100.

Jakobovits, Rex M and Soderland, S. and Taira, R. K. and Brinkley, James F (2000) Requirements of a Web-Based Experiment Management System. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 374-378.

Jakobovits, Rex M and Soderland, S. G. and Tiara, R. K. and Brinkley, James F (2000) The Web-Interfacing Repository Manager: A Framework for Developing Web-Based Multimedia Applications for Medical Research. In Proceedings, International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, pages pp. 527-533.

Jakobovits, Rex M and Brinkley, James F (1997) Managing Medical Research Data with a Web-Interfacing Repository Manager. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 454-458.

Jakobovits, Rex M and Brinkley, James F (1998) Query-by-Context: A Framework for Modelling and Navigating Multimedia Research Data. In Proceedings, American Medical Informatics Association Fall Symposium, pages 1021.

Jakobovits, Rex M and Rosse, Cornelius and Brinkley, James F (2002) WIRM: an Open Source Toolkit for Building Biomedical Web Applications . Journal of the American Medical Informatics Association 9(6):pp. 557-570.

Jakobovits, Rex M and Brinkley, James F and Rosse, Cornelius and Weinberger, E. (2001) Enabling Clinicians, Researchers, and Educators to Build Custom Web-Based Biomedical Information Systems. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 279-283.

Jakobovits, Rex M and Modayur, Bharath R and Brinkley, James F (1996) A Web-Based Repository Manager for Brain Mapping Data. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 309-313.

Jakobovits, Rex M and Lewis, L. M. and Ahrens, J. P. and Shapiro, Linda G and Tanimoto, S. L. and Brinkley, James F (1996) A Visual Database Environment for Scientific Research. Journal of Visual Languages and Computing 7(4):pp. 361-375.

Kalet, Ira J and Wu, J. and Lease, M. and Austin-Seymour, M. M. and Brinkley, James F and Rosse, Cornelius (1999) Anatomical Information in Radiation Treatment Planning. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 291-295.

Kim, S. and Brinkley, James F and Rosse, Cornelius (1999) Design Features of on-Line Anatomy Information Resources: A Comparison with the Digital Anatomist. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 560-564.

Kinbar, K. and Hill, J. and Martin, Richard F and Mulligan, K. and Poliakov, Andrew V and Brinkley, James F and Lettich, E. and Ojemann, George A and Corina, David P (2002) Naming Deficits During Cortical Stimulation Mapping: Functional Specificity Reconsidered. in preparation.

Kinbar, K. and Martin, Richard F and Hill, J. and Mulligan, K. and Poliakov, Andrew V and Brinkley, James F and Ojemann, George A and Corina, David P (2001) Naming Deficits During Cortical Stimulation Mapping: Functional Specificity Reconsidered. In Proceedings, 8th Annual Meeting, Cognitive Neuroscience Society (CMS), pages 126.

Lober, W. B. and Brinkley, James F (1999) A Portable Image Annotation Tool for Web-Based Anatomy Atlases. In Proceedings, American Medical Informatics Association Fall Symposium, pages 1108.

Lober, W. B. and Brinkley, James F (2000) A Personal Annotated Image Server. In Proceedings, JAMIA Supplement, Fall 2000 Annual Symposium. Submitted.

Lober, W. B. and Brinkley, James F (2000) XML-Based Image Annotation: PAIS - a Personal Annotated Image Server. In Proceedings, Slice of Life 2000.

Lober, W. B. and Trigg, L. J. and Bliss, D. and Brinkley, James F (2001) IML: An Image Markup Language. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 403-407.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Mulligan, K. and Rosse, Cornelius (2001) A Next Generation Knowledge Source: Foundational Model of Neuroanatomy. In Proceedings, Society for Neuroscience Annual Meeting, pages 23.48.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Rosse, Cornelius (2001) Foundational Model of Neuroanatomy: Implications for the Human Brain Project. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 438-442, Washington, DC.

Martin, Richard F and Poliakov, Andrew V and Mulligan, K. A. and Corina, David P and Ojemann, George A and Brinkley, James F (2000) Multi-Patient Mapping of Language Sites on 3-D Brain Models. In Proceedings, Neuroimage, Human Brain Mapping Annual Meeting 11(5), pages S534.

Martin, Richard F and Poliakov, Andrew V and Mulligan, K. A. and Kinbar, K. and Corina, David P and Maravilla, K. and Lettich, E. and Ojemann, George A and Brinkley, James F (2000) Multi-Patient Mapping of Language Sites on 3-D Brain Models. In Proceedings, Abstracts, 30th Annual Meeting, Society for Neuroscience, pages 464.20.

Mejino, Jose L V and Rosse, Cornelius (1999) Conceptualization of Anatomical Spatial Entities in the Digital Anatomist Foundational Model. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 112-116, Washington, DC.

Mejino, Jose L V and Noy, N. F. and Musen, M. A. and Brinkley, James F and Rosse, Cornelius (2001) Representation of Structural Relationships in the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages 973.

Mejino, Jose L V and Rosse, Cornelius (1998) The Potential of the Digital Anatomist Foundational Model for Assuring Consistency in UMLS Sources. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 825-829, Orlando, Florida.

Modayur, Bharath R and Jakobovits, Rex M and Maravilla, K. and Ojemann, George A and Brinkley, James F (1997) Evaluation of a Visualization-Based Approach to Functional Brain Mapping. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 429-433.

Modayur, Bharath R and Ojemann, George A and Lettich, E. and Jakobovits, Rex M and Sundsten, John W and Brinkley, James F (1997) Information System for Mapping and Studying Cortical Language Organization. In Proceedings, Abstracts, Society for Neuroscience Annual Meeting, pages 2228.

Modayur, Bharath R and Prothero, J. and Ojemann, George A and Maravilla, K. and Brinkley, James F (1997) Visualization-Based Mapping of Language Function in the Brain. Neuroimage 6:pp. 245-258.

Modayur, Bharath R and Prothero, J. and Rosse, Cornelius and Jakobovits, Rex M and Brinkley, James F (1996) Visualization and Mapping of Neurosurgical Functional Data onto a 3-D MR-Based Model of the Brain Surface. In Proceedings, 1996 AMIA Fall Symposium, pages pp. 304-308.

Myers, L. M. and Brinkley, James F (1995) Visualization of Brain Surface Features Using Registered Partially Segmented MRI Scans. In Proceedings, SPIE Medical Imaging: Image Display, pages pp. 43-52.

Myers, L. M. and Prothero, J. S. and Brinkley, James F (1995) Volume Rendering of Multi-Spectral MR Data for Brain Language Site Mapping. In Proceedings, Advanced Visual Systems User Conference, pages pp. 471-480.

Neal, P. J. and Shapiro, Linda G and Rosse, Cornelius (1998) The Digital Anatomist Spatial Abstraction: A Scheme for the Spatial Description of Anatomical Features. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 423-427, Orlando, Florida.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2001) Server-Based Approach to Web Visualization of Integrated 3-D Medical Image Data. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 533-537.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2001) Server-Based Approach to Web Visualization of Integrated 3-D Brain Mapping Data. In Proceedings, Thirty-First Annual Meeting, Society for Neuroscience, pages 529.1.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2002) Server-Based Approach to Web Visualization of Integrated 3-D Medical Image Data. in preparation.

Poliakov, Andrew V and Hinshaw, Kevin P and Corina, David P and Steury, K. R. and Maravilla, K. R. and Ojemann, George A and Mulligan, K. A. and Brinkley, James F (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping. In Proceedings, Abstracts, Society for Neuroscience Annual Meeting, pages 654.1.

Poliakov, Andrew V and Jakobovits, Rex M and Martin, Richard F and Corina, David P and Brinkley, James F (2000) Software Tools for Visualization and Analysis of Human Brain Data for Language Mapping. In Proceedings, Neuroimage, Human Brain Mapping Annual Meeting 11(5), pages S907.

Prothero, J. S. and Prothero, John W (1982) Three-Dimensional Reconstruction from Serial Sections: I. A Portable Microcomputer-Based Software Package in Fortran.. Computers and Biomedical Research 15:pp. 598-604.

Prothero, J. S. and Prothero, John W (1986) Three-Dimensional Reconstruction from Serial Sections IV. The Reassembly Problem. Computers and Biomedical Research 19(4):pp. 361-373.

Prothero, J. S. and Prothero, John W (1989) A Software Package in C for Interactive 3d Reconstruction and Display of Anatomical Objects from Serial Section Data. In Proceedings, NCGA Proceedings, pages pp. 187-192.

Prothero, J. S. and Riggins, M. and Lindsay, A. and Harris, R. and Prothero, John W (1985) Three-Dimensional Reconstruction from Serial Sections III. Autoscan, a Software Package in Fortran for Semiautomated Photomicrography. Computers and Biomedical Research 18:pp. 132-136.

Ratiu, P. and Rosse, Cornelius (1994) Animations of Knee Anatomy.

Rosse, Cornelius (1995) The Potential of Computerized Representations of Anatomy in the Training of Health Care Providers. Academic Medicine 70(6):pp. 499-505.

Rosse, Cornelius (1997) Study Guide for Gross Anatomy and Embryology.

Rosse, Cornelius (1999) Anatomy Atlases. Clinical Anatomy 12:pp. 293-299.

Rosse, Cornelius (2000) Terminologia Anatomica; Considered from the Perspective of Next-Generation Knowledge Sources. Clinical Anatomy 14:pp. 120-133.

Rosse, Cornelius and Said, M. Ben and Eno, Kraig R and Brinkley, James F (1995) Enhancements of Anatomical Information in UMLS Knowledge Sources. In Proceedings, 19th Annual Symposium on Computer Applications in Medical Care, pages pp. 873-877.

Rosse, Cornelius and Brinkley, James F and Prothero, J. (1990) Structural Informatics: The Representation of Anatomical Knowledge in Computer Readable Form. In Mitchell, J. A., Eds. Proceedings, First Annual Educational and Research Conference, pages pp. 37-38.

Rosse, Cornelius and Mejino, Jose L V and Modayur, Bharath R and Jakobovits, Rex M and Hinshaw, Kevin P and Brinkley, James F (1998) Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base. Journal of the American Medical Informatics Association 5(1):pp. 17-40.

Rosse, Cornelius and Mejino, Jose L V and Shapiro, Linda G and Brinkley, James F (2000) Visible Human, Know Thyself: The Digital Anatomist Structural Abstraction. In Proceedings, Visible Human Project Conference 2000, pages pp. 85-86.

Rosse, Cornelius and Shapiro, Linda G and Brinkley, James F (1998) The Digital Anatomist Foundational Model: Principles for Defining and Structuring Its Concept Domain. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 820-824.

Rosse, Cornelius and Tuttle, M. S. (2001) Explaining the Brain to a Computer. In Proceedings, Human Brain Project Annual Meeting.

Shapiro, Linda G and Tanimoto, S. L. and Brinkley, James F and Ahrens, J. P. and Jakobovits, Rex M and Lewis, L. M. (1994) A Visual Database System for Data and Experiment Management in Model-Based Computer Vision. In Proceedings, Proceedings of the Second Cad-Based Vision Workshop, pages pp. 64-72.

Stalder, D. S. and Brinkley, James F (1999) The Digital Anatomist Foundational Model Server. In Proceedings, Perl Conference 3.0.

Stimac, G. K. and Sundsten, John W and Prothero, J. S. and Prothero, John W and Gerlach, R. and Sorbonne, R. (1988) Three-Dimensional Contour Surfacing of the Skull, Face, and Brain from CT and MR Images and from Anatomic Sections. AJR 151:pp. 807-810.

Sundsten, John W (1994) Interactive Atlas of the Brain.

Sundsten, John W and Brinkley, James F and Eno, Kraig R (1993) Digital Anatomist Browser: Teaching Neuroanatomy with the Use of Digital and Video-Disc Images Accessed by Computer. In Proceedings, Annual Meeting of American Association of Anatomists.

Sundsten, John W and Brinkley, James F and Eno, Kraig R and Harris, R. M. and Kastella, K. G. (1991) Interactive Use of Videodisc Animations of Computer-Reconstructed Human Brain. In Proceedings, Abstracts, Annual Meeting, Society for Neuroscience.

Sundsten, John W and Conley, D. M. and Ratiu, P. and Mulligan, K. A. and Rosse, Cornelius (2000) Digital Anatomist Web-Based Interactive Atlases.

Sundsten, John W and Kastella, K. G. (1992) Human Brain Animations.

Sundsten, John W and Kastella, K. G. and Conley, D. M. (1991) Videodisc Animation of 3d Computer Reconstructions of the Human Brain. JBC 18(2):pp. 45-49.

Sundsten, John W and Prothero, John W (1983) Three-Dimensional Reconstruction from Serial Sections: II. A Microcomputer-Based Facilty for Rapid Data Collection. The Anatomical Record 207:pp. 665-671.

Wong, B. A. and Brinkley, James F (1998) Dynamic 3-D Scene Navigation in Web-Based Anatomy Atlases. In Proceedings, Proceedings, American Medical Informatics Association Fall Symposium, pages 1100.

Wong, B. A. and Rosse, Cornelius and Brinkley, James F (1999) Semi-Automatic Scene Generation Using the Digital Anatomist Foundational Model. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 637-641.

Brinkley, James F and Rosse, Cornelius (2002) Imaging Informatics and the Human Brain Project: the Role of Structure, Review. Yearbook of Medical Informatics 2002:pp. 111-128.

Hinshaw, Kevin P (2000) Seeing Structure: Using Knowledge to Reconstruct and Illustrate Anatomy. PhD dissertation, Computer Science and Engineering, University of Washington.

Poliakov, Andrew V and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 349-353.

Kim, S. and Brinkley, James F and Rosse, Cornelius (2003) Profile of On-Line Anatomy Information Resources: Design and Instructional Implications. Clinical Anatomy 16(1):pp. 55-71.

Campbell, B. and Brinkley, James F and Rosse, Cornelius (2001) The Virtual Anatomy Lab: a Hands-On Anatomy Learning Environment . In Proceedings, MedVR 2001, pages pp. 85-87, Newport Beach, CA.

Jakobovits, Rex M (1999) The web interfacing repository manager: a framework for developing web-based experiment management systems. PhD dissertation, Computer Science and Engineering, University of Washington.

Albright, Evan M (2000) Dynamic scene generation and software parallel rendering of anatomical structures. MS thesis, Electrical Engineering, University of Washington.

Brinkley, James F and Jakobovits, Rex M and Rosse, Cornelius (2002) An Online Image Management System for Anatomy Teaching. In Proceedings, American Medical Informatics Association Fall Symposium, pages 983, San Antonio, Texas.

Mork, Peter and Suciu, Dan and Brinkley, James F and Rosse, Cornelius (2002) A Declarative Query Interface for Large Semantic Networks. In Proceedings, American Medical Informatics Association Fall Symposium, pages 1110, San Antonio, Texas.

Noy, N. F. and Musen, M. A. and Mejino, Jose L V and Rosse, Cornelius (2004) Pushing the Envelope: Challenges in a Frame-Based Representation of Human Anatomy. Data and Knowledge Engineering 48:pp. 335-359.

Weng, C. and Kahn, M. and Gennari, John H (2002) Temporal Knowledge Representation for Scheduling Tasks in Clinical Trial Protocols. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 879-883, San Antonio, Texas.

Mork, Peter and Shaker, R. and Halevy, A. and Tarczy-Hornoch, Peter (2002) PQL: A Declarative Query Language over Dynamic Biological Schemata. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 533-537, San Antonio, Texas.

Shaker, R. and Mork, Peter and Barclay, M. and Tarczy-Hornoch, Peter (2002) A Rule Driven Bi-Directional Translation System for Remapping Queries and Result Sets Between a Mediated Schema and Heterogeneous Data Sources. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 692-696, San Antonio, Texas.

Kalet, Ira J and Whipple, Mark and Pessah, S. and Barker, J. and Austin-Seymour, M. M. and Shapiro, Linda G (2002) A Rule-based Model for Local and Regional Tumor Spread. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 360-364, San Antonio, Texas.

Teng, C. C. and Austin-Seymour, M. M. and Barker, J. and Kalet, Ira J and Shapiro, Linda G and Whipple, Mark (2002) Head and Neck Lymph Node Region Delineation with 3-D CT Image Registration. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 767-771, San Antonio, Texas.

Rosse, Cornelius and Mejino, Jose L V (2003) A Reference Ontology for Bioinformatics: The Foundational Model of Anatomy. Journal of Biomedical Informatics 36:pp. 478-500.

Mork, Peter and Brinkley, James F and Rosse, Cornelius (2003) OQAFMA Querying Agent for the Foundational Model of Anatomy: a Prototype for Providing Flexible and Efficient Access to Large Semantic Networks. Journal of Biomedical Informatics 36:pp. 501-517.

Travillian, Ravensara S and Rosse, Cornelius and Shapiro, Linda G (2003) An Approach to the Anatomical Correlation of Species through the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 669-673.

Distelhorst, G. M. and Srivastava, V. and Rosse, Cornelius and Brinkley, James F (2003) A Prototype Natural Language Interface to a Large Complex Knowledge Base, the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 200-204.

Martin, Richard F and Rickard, K. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2003) The Evolving Neuroanatomical Component of the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages 927.

Mejino, Jose L V and Agoncillo, Augusto V and Rickard, K. L. and Rosse, Cornelius (2003) Representing Complexity in Part-Whole Relationships within the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 450-454.

Tang, Z. and Kadiyska, Y. and Li, Hao and Suciu, Dan and Brinkley, James F (2003) Dynamic XML Based Exchange of Relational Data: Application to the Human Brain Project. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 649-653.

Distelhorst, G. M. and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (2004) An Improved Natural Language Interface to a Complex Anatomical Knowledge Base. In Proceedings, MedInfo 2004, pages 1575, San Francisco, CA.

Fong, Christine and Rosse, Cornelius and Clark, J. I. and Shapiro, Linda G and Brinkley, James F (2004) An Ontology-based Image Repository for a Biomedical Research Lab. In Proceedings, MedInfo 2004, pages 1598, San Francisco, CA.

Li, Hao and Brinkley, James F and Gennari, John H (2004) Semi-automatic Database Design for Neuroscience Experiment Management Systems. In Proceedings, MedInfo 2004, pages 1717, San Francisco, CA.

Tang, Z. and Kadiyska, Y. and Suciu, Dan and Brinkley, James F (2004) Results Visualization in the XBrain XML Interface to a Relational Database. In Proceedings, MedInfo 2004, pages 1878, San Francisco, CA.

Smith, Barry and Rosse, Cornelius (2004) The Role of Foundational Relations in the Alignment of Biomedical Ontologies. In Proceedings, MedInfo 2004, pages pp. 444-448, San Francisco, CA.

Michael, J. and Mejino, Jose L V and Rosse, Cornelius (2001) The Role of Definitions in Biomedical Concept Representation. In Proceedings, American Medical Informatics Association Fall Symposium, pages pp. 463-467.

Detwiler, Landon T and Mejino, Jose L V and Rosse, Cornelius and Brinkley, James F (2003) Efficient Web-Based Navigation of the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages 829.

Poliakov, Andrew V and Moore, Eider B and Brinkley, James F (2004) Use of Remote Surface Based Tools for Visualizing Integrated Brain Imaging Data. In Proceedings, MedInfo 2004, pages 1814, San Francisco, CA.

Moore, Eider B and Poliakov, Andrew V and Brinkley, James F (2004) Brain Visualization in Java3D. In Proceedings, MedInfo 2004, pages 1761, San Francisco, CA. (Received "Best Poster" award.).

Detwiler, Landon T and Chung, Emily and Li, A. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius and Shapiro, Linda G (2004) A Relation-Centric Query Engine for the Foundational Model of Anatomy. In Proceedings, MedInfo 2004, pages pp. 341-345, San Francisco, CA.

Hertzenberg, X. and Poliakov, Andrew V and Brinkley, James F (2004) Unobtrusive Integration of Data Management with fMRI Analysis. In Proceedings, MedInfo 2004, pages 1639, San Francisco, CA.

Agoncillo, Augusto V and Mejino, Jose L V and Rickard, K. L. and Detwiler, Landon T and Rosse, Cornelius (2003) Proposed Classification of Cells in the Foundational Model of Anatomy. In Proceedings, American Medical Informatics Association Fall Symposium, pages 775.

Mejino, Jose L V and Rosse, Cornelius (2004) Symbolic modeling of structural relationships in the Foundational Model of Anatomy. In Proceedings, First International Workshop on Formal Biomedical Knowledge Representation (KR-MED 2004), Whistler Mountain, Canada. To appear.

Martin, Richard F and Brinkley, James F and Hertzenberg, X. and Poliakov, Andrew V and Corina, David P and Ojemann, George A (2004) Anatomical Parcellation of Cortical Language Sites. In Proceedings, MedInfo 2004, pages 1742, San Francisco, CA.

Re, Chris and Brinkley, James F and Hinshaw, Kevin P and Suciu, Dan (2004) Distributed XQuery. In Proceedings, Workshop on Information Integration on the Web (IIWeb), Toronto.

Rickard, K. L. and Mejino, Jose L V and Martin, Richard F and Agoncillo, Augusto V and Rosse, Cornelius (2004) Problems and Solutions with Integrating Terminologies into Evolving Knowledge Bases. In Proceedings, MedInfo 2004, pages pp. 420-424, San Francisco, CA.

Cook, Daniel L and Mejino, Jose L V and Rosse, Cornelius (2004) Evolution of a Foundational Model of Physiology: Symbolic Representation for Functional Bioinformatics. In Proceedings, MedInfo 2004, pages pp. 336-340, San Francisco, CA.

Brinkley, James F and Bradley, S. W. and Sundsten, John W and Rosse, Cornelius (1997) The Digital Anatomist Information System and Its Use in the Generation and Delivery of Web-Based Anatomy Atlases. Computers and Biomedical Research 30:pp. 472-503.