Author: Brinkley, James F

Number of items: 131.

Poliakov, Andrew V and X., Hertzenberg and Moore, Eider B and Corina, David P and Ojemann, George A and Brinkley, James F (2008) Unobtrusive Integration of Data Management With fMRI Analysis.

Yngve, Gary and Brinkley, James F and Cook, Daniel L and Shapiro, Linda G (2007) A Model Browser for Biosimulation.

Mejino, Jose L V and Martin, Richard F and Detwiler, Landon T and Brinkley, James F (2007) Challenges in Reconciling Different Views of Neuroanatomy in a Reference Ontology of Anatomy.

Moore, Eider B and Poliakov, Andrew V and Lincoln, Peter and Brinkley, James F (2007) MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data.

Detwiler, Landon T and Brinkley, James F (2007) Querying Non-Materialized Ontology Views.

Brinkley, James F and Ach, Daniel and Franklin, Joshua D and Anderson, Nicholas and Stevens, Anne and Tarczy-Hornoch, Peter (2007) Tools for Clinical Trials Management: Handling the Norm and the Outliers.

Li, Xiang and Gennari, John H and Brinkley, James F (2007) XGI: A Graphical Interface for XQuery Creation.

Brinkley, James F and Suciu, Dan and Detwiler, Landon T and Gennari, John H and Rosse, Cornelius (2006) A framework for using reference ontologies as a foundation for the semantic web.

Re, Chris and Brinkley, James F and Suciu, Dan (2006) A performant XQuery to SQL translator.

Detwiler, Landon T and Brinkley, James F (2006) Custom Views of Reference Ontologies.

Fong, Christine and Brinkley, James F (2006) Customizable Electronic Laboratory Online (CELO): A Web-based Data Management System Builder for Biomedical Research Laboratories.

Warren, Wayne and Agoncillo, Augusto V and Franklin, Joshua D and Brinkley, James F (2006) Intelligent web-based whole body visualization for anatomy education.

Brinkley, James F and Poliakov, Andrew V and Moore, Eider B and Detwiler, Landon T and Franklin, Joshua D and Corina, David P and Ojemann, George A (2006) Lightweight XML-based query, integration and visualization of distributed, multimodality brain imaging data .

Li, Hao and Gennari, John H and Brinkley, James F (2006) Model Driven Laboratory Information Management Systems.

Bales, Nathan and Brinkley, James F and Lee, E. Sally and Mathur, Shobhit and Re, Chris and Suciu, Dan (2005) A Framework for XML-based Integration of Data, Visualization and Analysis in a Biomedical Domain.

Cho, Hansang and Corina, David P and Brinkley, James F and Ojemann, George A and Shapiro, Linda G (2005) A New Template Matching Method using Variance Estimation for Spike Sorting.

Wang, Kelan and Tarczy-Hornoch, Peter and Shaker, Ron and Mork, Peter and Brinkley, James F (2005) BioMediator data integration: beyond genomics to neuroscience data.

Corina, David P and Gibson, Erin K. and Martin, Richard F and Poliakov, Andrew V and Brinkley, James F and Ojemann, George A (2005) Dissociation of Action and Object Naming: Evidence From Cortical Stimulation Mapping.

Smith, Veronica S and Shapiro, Linda G and Hanlon, D. and Martin, Richard F and Brinkley, James F and Poliakov, Andrew V and Ojemann, George A and Corina, David P (2005) Evaluating spatial normalization methods for the human brain.

Warren, Wayne and Brinkley, James F (2005) Knowledge-Based, Interactive, Custom Anatomical Scene Creation for Medical Education: The Biolucida System.

Shapiro, Linda G and Chung, Emily and Detwiler, Landon T and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2005) Processes and Problems in the Formative Evaluation of an Interface to the Foundational Model of Anatomy Knowledge Base.

Poliakov, Andrew V and Albright, Evan M and Hinshaw, Kevin P and Corina, David P and Martin, Richard F and Brinkley, James F (2005) Server-based Approach to Web Visualization of Integrated Three-dimensional Brain Imaging Data.

Moore, Eider B and Poliakov, Andrew V and Brinkley, James F (2005) Web-enabled 3D Multimodality Brain Visualization in Java.

Detwiler, Landon T and Chung, Emily and Li, A. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius and Shapiro, Linda G (2004) A Relation-Centric Query Engine for the Foundational Model of Anatomy.

Distelhorst, G. M. and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (2004) An Improved Natural Language Interface to a Complex Anatomical Knowledge Base.

Fong, Christine and Rosse, Cornelius and Clark, J. I. and Shapiro, Linda G and Brinkley, James F (2004) An Ontology-based Image Repository for a Biomedical Research Lab.

Martin, Richard F and Brinkley, James F and Hertzenberg, X. and Poliakov, Andrew V and Corina, David P and Ojemann, George A (2004) Anatomical Parcellation of Cortical Language Sites.

Moore, Eider B and Poliakov, Andrew V and Brinkley, James F (2004) Brain Visualization in Java3D.

Re, Chris and Brinkley, James F and Hinshaw, Kevin P and Suciu, Dan (2004) Distributed XQuery.

Tang, Z. and Kadiyska, Y. and Suciu, Dan and Brinkley, James F (2004) Results Visualization in the XBrain XML Interface to a Relational Database.

Li, Hao and Brinkley, James F and Gennari, John H (2004) Semi-automatic Database Design for Neuroscience Experiment Management Systems.

Hertzenberg, X. and Poliakov, Andrew V and Brinkley, James F (2004) Unobtrusive Integration of Data Management with fMRI Analysis.

Poliakov, Andrew V and Moore, Eider B and Brinkley, James F (2004) Use of Remote Surface Based Tools for Visualizing Integrated Brain Imaging Data.

Distelhorst, G. M. and Srivastava, V. and Rosse, Cornelius and Brinkley, James F (2003) A Prototype Natural Language Interface to a Large Complex Knowledge Base, the Foundational Model of Anatomy.

Tang, Z. and Kadiyska, Y. and Li, Hao and Suciu, Dan and Brinkley, James F (2003) Dynamic XML Based Exchange of Relational Data: Application to the Human Brain Project.

Detwiler, Landon T and Mejino, Jose L V and Rosse, Cornelius and Brinkley, James F (2003) Efficient Web-Based Navigation of the Foundational Model of Anatomy.

Mork, Peter and Brinkley, James F and Rosse, Cornelius (2003) OQAFMA Querying Agent for the Foundational Model of Anatomy: a Prototype for Providing Flexible and Efficient Access to Large Semantic Networks.

Kim, S. and Brinkley, James F and Rosse, Cornelius (2003) Profile of On-Line Anatomy Information Resources: Design and Instructional Implications.

Martin, Richard F and Rickard, K. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2003) The Evolving Neuroanatomical Component of the Foundational Model of Anatomy.

Mork, Peter and Suciu, Dan and Brinkley, James F and Rosse, Cornelius (2002) A Declarative Query Interface for Large Semantic Networks.

Brinkley, James F and Jakobovits, Rex M and Rosse, Cornelius (2002) An Online Image Management System for Anatomy Teaching.

Brinkley, James F and Rosse, Cornelius (2002) Imaging and the Human Brain Project: a Review.

Brinkley, James F and Rosse, Cornelius (2002) Imaging Informatics and the Human Brain Project: the Role of Structure, Review.

Kinbar, K. and Hill, J. and Martin, Richard F and Mulligan, K. and Poliakov, Andrew V and Brinkley, James F and Lettich, E. and Ojemann, George A and Corina, David P (2002) Naming Deficits During Cortical Stimulation Mapping: Functional Specificity Reconsidered.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2002) Server-Based Approach to Web Visualization of Integrated 3-D Medical Image Data.

Hinshaw, Kevin P and Poliakov, Andrew V and Martin, Richard F and Moore, Eider B and Shapiro, Linda G and Brinkley, James F (2002) Shape-Based Cortical Surface Segmentation for Visualization Brain Mapping.

Jakobovits, Rex M and Rosse, Cornelius and Brinkley, James F (2002) WIRM: an Open Source Toolkit for Building Biomedical Web Applications .

Jakobovits, Rex M and Rosse, Cornelius and Brinkley, James F (2002) WIRM: An open source toolkit for building biomedical web applications.

Corina, David P and Steury, K. and Poliakov, Andrew V and Martin, Richard F and Mulligan, K. A. and Maravilla, K. and Lettich, E. and Brinkley, James F and Inuoe, K. and Ojemann, George A (2001) A Comparison of Language Function Derived from Cortical Stimulation Mapping and FMRI: Data from Object Naming.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Mulligan, K. and Rosse, Cornelius (2001) A Next Generation Knowledge Source: Foundational Model of Neuroanatomy.

Jakobovits, Rex M and Brinkley, James F and Rosse, Cornelius and Weinberger, E. (2001) Enabling Clinicians, Researchers, and Educators to Build Custom Web-Based Biomedical Information Systems.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Rosse, Cornelius (2001) Foundational Model of Neuroanatomy: Implications for the Human Brain Project.

Lober, W. B. and Trigg, L. J. and Bliss, D. and Brinkley, James F (2001) IML: An Image Markup Language.

Kinbar, K. and Martin, Richard F and Hill, J. and Mulligan, K. and Poliakov, Andrew V and Brinkley, James F and Ojemann, George A and Corina, David P (2001) Naming Deficits During Cortical Stimulation Mapping: Functional Specificity Reconsidered.

Mejino, Jose L V and Noy, N. F. and Musen, M. A. and Brinkley, James F and Rosse, Cornelius (2001) Representation of Structural Relationships in the Foundational Model of Anatomy.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2001) Server-Based Approach to Web Visualization of Integrated 3-D Brain Mapping Data.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2001) Server-Based Approach to Web Visualization of Integrated 3-D Medical Image Data.

Campbell, B. and Brinkley, James F and Rosse, Cornelius (2001) The Virtual Anatomy Lab: a Hands-On Anatomy Learning Environment .

Lober, W. B. and Brinkley, James F (2000) A Personal Annotated Image Server.

Corina, David P and Poliakov, Andrew V and Steury, K. and Martin, Richard F and Brinkley, James F and Mulligan, K. A. and Ojemann, George A (2000) Correspondences between Language Cortex Identified by Cortical Stimulation Mapping and FMRI.

Martin, Richard F and Poliakov, Andrew V and Mulligan, K. A. and Corina, David P and Ojemann, George A and Brinkley, James F (2000) Multi-Patient Mapping of Language Sites on 3-D Brain Models.

Martin, Richard F and Poliakov, Andrew V and Mulligan, K. A. and Kinbar, K. and Corina, David P and Maravilla, K. and Lettich, E. and Ojemann, George A and Brinkley, James F (2000) Multi-Patient Mapping of Language Sites on 3-D Brain Models.

Jakobovits, Rex M and Soderland, S. and Taira, R. K. and Brinkley, James F (2000) Requirements of a Web-Based Experiment Management System.

Poliakov, Andrew V and Jakobovits, Rex M and Martin, Richard F and Corina, David P and Brinkley, James F (2000) Software Tools for Visualization and Analysis of Human Brain Data for Language Mapping.

Jakobovits, Rex M and Soderland, S. G. and Tiara, R. K. and Brinkley, James F (2000) The Web-Interfacing Repository Manager: A Framework for Developing Web-Based Multimedia Applications for Medical Research.

Brinkley, James F and Albright, Evan M and Kim, S. and Mejino, Jose L V and Shapiro, Linda G and Rosse, Cornelius (2000) Visible Human, Construct Thyself: The Digital Anatomist Dynamic Scene Generator.

Rosse, Cornelius and Mejino, Jose L V and Shapiro, Linda G and Brinkley, James F (2000) Visible Human, Know Thyself: The Digital Anatomist Structural Abstraction.

Lober, W. B. and Brinkley, James F (2000) XML-Based Image Annotation: PAIS - a Personal Annotated Image Server.

Corina, David P and Steury, K. R. and Mulligan, K. A. and Hinshaw, Kevin P and Poliakov, Andrew V and Brinkley, James F and Maravilla, K. R. and Ojemann, George A (1999) A Comparison of Language Cortex Indentified by Cortical Stimulation Mapping and FMRI Techniques.

Lober, W. B. and Brinkley, James F (1999) A Portable Image Annotation Tool for Web-Based Anatomy Atlases.

Kalet, I. J. and Wu, J. and Lease, M. and Austin-Seymour, M. M. and Brinkley, James F and Rosse, Cornelius (1999) Anatomical Information in Radiation Treatment Planning.

Kim, S. and Brinkley, James F and Rosse, Cornelius (1999) Design Features of on-Line Anatomy Information Resources: A Comparison with the Digital Anatomist.

Brinkley, James F and Wong, B. A. and Hinshaw, Kevin P and Rosse, Cornelius (1999) Design of an Anatomy Information System.

Corina, David P and McBurney, S. L. and Dodrill, C. and Hinshaw, Kevin P and Brinkley, James F and Ojemann, George A (1999) Functional Roles of Broca's Area and SMG: Evidence from Cortical Stimulation Mapping in a Deaf Signer.

Poliakov, Andrew V and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping.

Poliakov, Andrew V and Hinshaw, Kevin P and Corina, David P and Steury, K. R. and Maravilla, K. R. and Ojemann, George A and Mulligan, K. A. and Brinkley, James F (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping.

Hahn, J. S. and Burnside, E. and Brinkley, James F and Rosse, Cornelius and Musen, M. A. (1999) Representing the Digital Anatomist Foundational Model as a Protege Ontology.

Wong, B. A. and Rosse, Cornelius and Brinkley, James F (1999) Semi-Automatic Scene Generation Using the Digital Anatomist Foundational Model.

Stalder, D. S. and Brinkley, James F (1999) The Digital Anatomist Foundational Model Server.

Bowden, D. M. and Robertson, J. E. and Martin, Richard F and Dubach, M. F. and Wu, J. S. and McLean, M. R. and Brinkley, James F (1999) Web-Tools for Neuroscience Based on Neuronames, a Template Brain Atlas, Edgewarp and Geographic Information Systems Software.

Wong, B. A. and Brinkley, James F (1998) Dynamic 3-D Scene Navigation in Web-Based Anatomy Atlases.

Hinshaw, Kevin P and Brinkley, James F (1998) Incorporating Constraint-Based Shape Models into an Interactive System for Functional Brain Mapping.

Corina, David P and McBurney, S. L. and Hinshaw, Kevin P and Brinkley, James F and Lettich, E. and Ojemann, George A (1998) Left Hemisphere Specialization for American Sign Language: A Cortical Stimulation Study.

Rosse, Cornelius and Mejino, Jose L V and Modayur, Bharath R and Jakobovits, Rex M and Hinshaw, Kevin P and Brinkley, James F (1998) Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base.

Jakobovits, Rex M and Brinkley, James F (1998) Query-by-Context: A Framework for Modelling and Navigating Multimedia Research Data.

Brinkley, James F and Rosse, Cornelius (1998) Requirements for an on-Line Knowledge-Based Anatomy Information System.

Rosse, Cornelius and Shapiro, Linda G and Brinkley, James F (1998) The Digital Anatomist Foundational Model: Principles for Defining and Structuring Its Concept Domain.

Brinkley, James F (1998) The Use of Anatomical Knowledge in Medical Imaging: An Overview of the University of Washington Structural Informatics Group.

Brinkley, James F and Myers, L. M. and Prothero, J. S. and Heil, G. H. and Tsuruda, J. S. and Maravilla, K. R. and Ojemann, George A and Rosse, Cornelius (1997) A Structural Information Framework for Brain Mapping.

Modayur, Bharath R and Jakobovits, Rex M and Maravilla, K. and Ojemann, George A and Brinkley, James F (1997) Evaluation of a Visualization-Based Approach to Functional Brain Mapping.

Modayur, Bharath R and Ojemann, George A and Lettich, E. and Jakobovits, Rex M and Sundsten, John W and Brinkley, James F (1997) Information System for Mapping and Studying Cortical Language Organization.

Jakobovits, Rex M and Brinkley, James F (1997) Managing Medical Research Data with a Web-Interfacing Repository Manager.

Hinshaw, Kevin P and Brinkley, James F (1997) Shape-Based Interactive Three-Dimensional Medical Image Segmentation.

Brinkley, James F and Prothero, J. S. (1997) Slisp: A Flexible Software Toolkit for Hybrid, Embedded and Distributed Applications.

Brinkley, James F and Rosse, Cornelius (1997) The Digital Anatomist Distributed Framework and Its Applications to Knowledge Based Medical Imaging.

Brinkley, James F and Bradley, S. W. and Sundsten, John W and Rosse, Cornelius (1997) The Digital Anatomist Information System and Its Use in the Generation and Delivery of Web-Based Anatomy Atlases.

Brinkley, James F and Bradley, S. W. and Sundsten, John W and Rosse, Cornelius (1997) The Digital Anatomist Information System and Its Use in the Generation and Delivery of Web-Based Anatomy Atlases.

Hinshaw, Kevin P and Brinkley, James F (1997) Using 3-D Shape Models to Guide Segmentation of MR Brain Images.

Modayur, Bharath R and Prothero, J. and Ojemann, George A and Maravilla, K. and Brinkley, James F (1997) Visualization-Based Mapping of Language Function in the Brain.

Dailey, D. J. and Brinkley, James F (1996) A Metric for Quantifying Response Time in a Browser Application.

Jakobovits, Rex M and Lewis, L. M. and Ahrens, J. P. and Shapiro, Linda G and Tanimoto, S. L. and Brinkley, James F (1996) A Visual Database Environment for Scientific Research.

Jakobovits, Rex M and Modayur, Bharath R and Brinkley, James F (1996) A Web-Based Repository Manager for Brain Mapping Data.

Modayur, Bharath R and Prothero, J. and Rosse, Cornelius and Jakobovits, Rex M and Brinkley, James F (1996) Visualization and Mapping of Neurosurgical Functional Data onto a 3-D MR-Based Model of the Brain Surface.

Brinkley, James F and Eno, Kraig R and Sundsten, John W and Conley, D. M. and Rosse, Cornelius (1995) A Distributed Framework for Distance Learning in Anatomy: The Digital Anatomist Interactive Atlas.

Graney, D. and Conley, D. and Sundsten, John W and Ratiu, P. and Rauschning, Wolfgang and Brinkley, James F and Rosse, Cornelius (1995) Digital Anatomist Interactive Atlases.

Rosse, Cornelius and Said, M. Ben and Eno, Kraig R and Brinkley, James F (1995) Enhancements of Anatomical Information in UMLS Knowledge Sources.

Hinshaw, Kevin P and Altman, R. B. and Brinkley, James F (1995) Shape-Based Models for Interactive Segmentation of Medical Images.

Myers, L. M. and Brinkley, James F (1995) Visualization of Brain Surface Features Using Registered Partially Segmented MRI Scans.

Myers, L. M. and Prothero, J. S. and Brinkley, James F (1995) Volume Rendering of Multi-Spectral MR Data for Brain Language Site Mapping.

Bradley, S. W. and Rosse, Cornelius and Brinkley, James F (1995) Web-Based Access to an Online Atlas of Anatomy: The Digital Anatomist Common Gateway Interface.

Brinkley, James F (1994) A Distributed, Object-Oriented Framework for Medical Image Management and Analysis: Application to Evaluation of Medical Image Segmentation Techniques.

Shapiro, Linda G and Tanimoto, S. L. and Brinkley, James F and Ahrens, J. P. and Jakobovits, Rex M and Lewis, L. M. (1994) A Visual Database System for Data and Experiment Management in Model-Based Computer Vision.

Brinkley, James F (1994) Educational Systems:Synopsis.

Dailey, D. J. and Eno, Kraig R and Brinkley, James F (1994) Performance Evaluation of a Distance Learning Program.

Brinkley, James F (1994) The Digital Anatomist Project.

Brinkley, James F (1993) A Flexible, Generic Model for Anatomic Shape: Application to Interactive Two-Dimensional Medical Image Segmentation and Matching.

Conley, D. M. and Brinkley, James F and Rauschning, Wolfgang and Rosse, Cornelius (1993) A Multimedia Approach to the Study of the Mediastinum Utilizing a Computer-Generated Three-Dimensional Model.

Dailey, D. J. and Eno, Kraig R and Zick, G. L. and Brinkley, James F (1993) A Network Model for Wide Area Access to Structural Information.

Sundsten, John W and Brinkley, James F and Eno, Kraig R (1993) Digital Anatomist Browser: Teaching Neuroanatomy with the Use of Digital and Video-Disc Images Accessed by Computer.

Brinkley, James F and Eno, Kraig R and Sundsten, John W (1993) Knowledge-Based Client-Server Approach to Structural Information Retrieval: The Digital Anatomist Browser.

Altman, R. B. and Brinkley, James F (1993) Probabilistic Constraint Satisfaction with Structural Models: Application to Organ Modelling by Radial Contours.

Brinkley, James F (1993) The Potential for Three-Dimensional Ultrasound.

Brinkley, James F (1992) Hierarchical Geometric Constraint Networks as a Representation for Spatial Structural Knowledge.

Eno, Kraig R and Sundsten, John W and Brinkley, James F (1991) A Multimedia Anatomy Browser Incorporating a Knowledge Base and 3-D Images.

Sundsten, John W and Brinkley, James F and Eno, Kraig R and Harris, R. M. and Kastella, K. G. (1991) Interactive Use of Videodisc Animations of Computer-Reconstructed Human Brain.

Brinkley, James F (1991) Structural Informatics and Its Applications in Medicine and Biology.

Greenes, R. G. and Brinkley, James F (1990) Radiology Applications.

Rosse, Cornelius and Brinkley, James F and Prothero, J. (1990) Structural Informatics: The Representation of Anatomical Knowledge in Computer Readable Form.

Brinkley, James F and Prothero, J. S. and Prothero, John W and Rosse, Cornelius (1989) A Framework for the Design of Knowledge-Based Systems in Structural Biology.

Brinkley, James F and Altman, R. B. and Duncan, B. S. and Buchanan, B. G. and Jardetzky, O. (1988) Heuristic Refinement Method for the Derivation of Protein Solution Structures: Validation on Cytochrome B562.

Brinkley, James F (1988) Representing Biologic Objects as Geometric Constraint Networks.

This list was generated on Fri May 16 17:01:13 PDT 2008.