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Publications

Project: Foundational Model of Anatomy

Number of items: 65.

Turner, Jessica A and Mejino, Jose L V and Brinkley, James F and Detwiler, Landon T and Lee, Hyo Jong and Martone, Maryann E and Rubin, Daniel L (2010) Application of neuroanatomical ontologies for neuroimaging data annotation.

Nichols, Nolan and Perlmutter, Aaron and Mejino, Jose L V and Brinkley, James F (2010) Representing Neural Connectivity in the Foundational Model of Anatomy Ontology.

Mejino, Jose L V and Detwiler, Landon T and Turner, Jessica A and Martone, Maryann E and Rubin, Daniel L and Brinkley, James F (2010) Enabling RadLex with the Foundational Model of Anatomy Ontology to Organize and Integrate Neuro-imaging Data.

Detwiler, Landon T and Shaw, Marianne and Brinkley, James F (2010) Ontology View Query Management.

Brinkley, James F and Turner, Jessica A and Detwiler, Landon T and Mejino, Jose L V and Martone, Maryanne E and Rubin, Daniel L (2010) Intelligent Queries over BIRN Data using the Foundational Model of Anatomy and a Distributed Query-Based Data Integration System.

Kalet, Ira J (2009) Principles of Biomedical Informatics.

Gennari, John H and Neal, Maxwell L and Mejino, Jose L V and Cook, Daniel L (2009) Using multiple reference ontologies: Managing composite annotations.

Detwiler, Landon T and Shaw, Marianne and Cook, Daniel L and Gennari, John H and Brinkley, James F (2009) Post-Coordinating Orthogonal Ontologies for Data Annotation.

Gu, Huanying and Wei, Duo and Mejino, Jose L V and Elhanan, Gai (2009) Relationship auditing of the FMA ontology.

Kalet, Ira and Mejino, Jose L V and Wang, Vania and Whipple, Mark and Brinkley, James F (2009) Content-specific auditing of a large scale anatomy ontology.

Cook, Daniel L and Mejino, Jose L V and Neal, Maxwell L and Gennari, John H (2008) Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology.

Shaw, Marianne and Detwiler, Landon T and Brinkley, James F and Suciu, Dan and Mejino, Jose L V (2008) Generating Application Ontologies from Reference Ontologies.

Mejino, Jose L V and Rubin, Daniel L and Brinkley, James F (2008) FMA-RadLex: An Application Ontology of Radiological Anatomy derived from the Foundational Model of Anatomy Reference Ontology.

Franklin, Joshua D and Mejino, Jose L V and Detwiler, Landon T and Rubin, Daniel L and Brinkley, James F (2008) Web Service Access to Semantic Web Ontologies for Data Annotation.

Rosse, Cornelius and Mejino, Jose L V (2007) The Foundational Model of Anatomy Ontology.

Smith, Barry and Ashburner, Michael and Rosse, Cornelius and Bard, Jonathan and Bug, William and Ceusters, Werner and Goldberg, Louis J and Eilbeck, Karen and Ireland, Amelia and Mungall, Christopher J and OBI Consortium, The and Leontis, Neocles and Rocca‐Serra, a b and Ruttenberg, Alan and Sansone, Susanna-Assunta and Shah, Migam and Whetzel, Patricia L and Lewissi, Suzanna (2007) The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration.

Detwiler, Landon T and Brinkley, James F (2007) Querying Non-Materialized Ontology Views.

Mejino, Jose L V and Martin, Richard F and Detwiler, Landon T and Brinkley, James F (2007) Challenges in Reconciling Different Views of Neuroanatomy in a Reference Ontology of Anatomy.

Detwiler, Landon T and Brinkley, James F (2006) Custom Views of Reference Ontologies.

Brinkley, James F and Suciu, Dan and Detwiler, Landon T and Gennari, John H and Rosse, Cornelius (2006) A framework for using reference ontologies as a foundation for the semantic web.

Warren, Wayne and Agoncillo, Augusto V and Franklin, Joshua D and Brinkley, James F (2006) Intelligent web-based whole body visualization for anatomy education.

Travillian, Ravensara S and Diatchka, Kremena and Judge, Tejinder K and Wilamowska, Katarzyna and Shapiro, Linda G (2006) A Graphical User Interface for a Comparative Anatomy Information System: Design, Implementation and Usage Scenarios.

Au, Alan and Li, Xiang and Gennari, John H (2006) Differences Among Cell-structure Ontologies: FMA, GO, & CCO.

Benson, Noah and Whipple, Mark and Kalet, Ira J (2006) A Markov Model Approach to Predicting Regional Tumor Spread in the Lymphatic System of the Head and Neck.

Donnelly, Maureen and Bittner, Thomas and Rosse, Cornelius (2006) A formal theory for spatial representation and reasoning in biomedical ontologies.

Shapiro, Linda G and Chung, Emily and Detwiler, Landon T and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2005) Processes and Problems in the Formative Evaluation of an Interface to the Foundational Model of Anatomy Knowledge Base.

Rosse, Cornelius and Kumar, Anand and Mejino, Jose L V and Cook, Daniel L and Detwiler, Landon T and Smith, Barry (2005) A Strategy for Improving and Integrating Biomedical Ontologies.

Detwiler, Landon T and Rosse, Cornelius (2005) Knowledge Base Version Reintegration.

Smith, Barry and Mejino, Jose L V and Schultz, Stefan and Kumar, Anand and Rosse, Cornelius (2005) Anatomical information science.

Wang, Kelan and Tarczy-Hornoch, Peter and Shaker, Ron and Mork, Peter and Brinkley, James F (2005) BioMediator data integration: beyond genomics to neuroscience data.

Travillian, Ravensara S and Gennari, John H and Shapiro, Linda G (2005) Of Mice and Men: Design of a Comparative Anatomy Information System.

Smith, Barry and Ceusters, Werner and Klagges, Bert and Köhler, Jacob and Kumar, Anand and Lomax, Jane and Mungall, Chris and Neuhaus, Fabian and Rector, Alan L and Rosse, Cornelius (2005) Relations in biomedical ontologies.

Noy, N. F. and Musen, M. A. and Mejino, Jose L V and Rosse, Cornelius (2004) Pushing the Envelope: Challenges in a Frame-Based Representation of Human Anatomy.

Distelhorst, G. M. and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (2004) An Improved Natural Language Interface to a Complex Anatomical Knowledge Base.

Smith, Barry and Rosse, Cornelius (2004) The Role of Foundational Relations in the Alignment of Biomedical Ontologies.

Detwiler, Landon T and Chung, Emily and Li, A. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius and Shapiro, Linda G (2004) A Relation-Centric Query Engine for the Foundational Model of Anatomy.

Mejino, Jose L V and Rosse, Cornelius (2004) Symbolic modeling of structural relationships in the Foundational Model of Anatomy.

Gennari, John H and Silberfein, Adam and Wiley, Jesse (2004) Integrating Genomic Knowledge Sources through an Anatomy Ontology.

Rickard, K. L. and Mejino, Jose L V and Martin, Richard F and Agoncillo, Augusto V and Rosse, Cornelius (2004) Problems and Solutions with Integrating Terminologies into Evolving Knowledge Bases.

Cook, Daniel L and Mejino, Jose L V and Rosse, Cornelius (2004) Evolution of a Foundational Model of Physiology: Symbolic Representation for Functional Bioinformatics.

Detwiler, Landon T and Rosse, Cornelius and Shapiro, Linda G (2004) An Intuitive Graphical Query Interface for Protégé Knowledge Bases.

Rosse, Cornelius and Mejino, Jose L V (2003) A Reference Ontology for Bioinformatics: The Foundational Model of Anatomy.

Mork, Peter and Brinkley, James F and Rosse, Cornelius (2003) OQAFMA Querying Agent for the Foundational Model of Anatomy: a Prototype for Providing Flexible and Efficient Access to Large Semantic Networks.

Travillian, Ravensara S and Rosse, Cornelius and Shapiro, Linda G (2003) An Approach to the Anatomical Correlation of Species through the Foundational Model of Anatomy.

Distelhorst, G. M. and Srivastava, V. and Rosse, Cornelius and Brinkley, James F (2003) A Prototype Natural Language Interface to a Large Complex Knowledge Base, the Foundational Model of Anatomy.

Martin, Richard F and Rickard, K. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2003) The Evolving Neuroanatomical Component of the Foundational Model of Anatomy.

Mejino, Jose L V and Agoncillo, Augusto V and Rickard, K. L. and Rosse, Cornelius (2003) Representing Complexity in Part-Whole Relationships within the Foundational Model of Anatomy.

Detwiler, Landon T and Mejino, Jose L V and Rosse, Cornelius and Brinkley, James F (2003) Efficient Web-Based Navigation of the Foundational Model of Anatomy.

Agoncillo, Augusto V and Mejino, Jose L V and Rickard, K. L. and Detwiler, Landon T and Rosse, Cornelius (2003) Proposed Classification of Cells in the Foundational Model of Anatomy.

Mork, Peter and Suciu, Dan and Brinkley, James F and Rosse, Cornelius (2002) A Declarative Query Interface for Large Semantic Networks.

Rosse, Cornelius and Tuttle, M. S. (2001) Explaining the Brain to a Computer.

Michael, J. and Mejino, Jose L V and Rosse, Cornelius (2001) The Role of Definitions in Biomedical Concept Representation.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Rosse, Cornelius (2001) Foundational Model of Neuroanatomy: Implications for the Human Brain Project.

Mejino, Jose L V and Noy, N. F. and Musen, M. A. and Brinkley, James F and Rosse, Cornelius (2001) Representation of Structural Relationships in the Foundational Model of Anatomy.

Rosse, Cornelius (2000) Terminologia Anatomica; Considered from the Perspective of Next-Generation Knowledge Sources.

Rosse, Cornelius and Mejino, Jose L V and Shapiro, Linda G and Brinkley, James F (2000) Visible Human, Know Thyself: The Digital Anatomist Structural Abstraction.

Agoncillo, Augusto V and Mejino, Jose L V and Rosse, Cornelius (1999) Influence of the Digital Anatomist Foundational Model on Traditional Representations of Anatomical Concepts.

Stalder, D. S. and Brinkley, James F (1999) The Digital Anatomist Foundational Model Server.

Wong, B. A. and Rosse, Cornelius and Brinkley, James F (1999) Semi-Automatic Scene Generation Using the Digital Anatomist Foundational Model.

Brinkley, James F and Wong, B. A. and Hinshaw, Kevin P and Rosse, Cornelius (1999) Design of an Anatomy Information System.

Mejino, Jose L V and Rosse, Cornelius (1999) Conceptualization of Anatomical Spatial Entities in the Digital Anatomist Foundational Model.

Mejino, Jose L V and Rosse, Cornelius (1998) The Potential of the Digital Anatomist Foundational Model for Assuring Consistency in UMLS Sources.

Neal, P. J. and Shapiro, Linda G and Rosse, Cornelius (1998) The Digital Anatomist Spatial Abstraction: A Scheme for the Spatial Description of Anatomical Features.

Rosse, Cornelius and Mejino, Jose L V and Modayur, Bharath R and Jakobovits, Rex M and Hinshaw, Kevin P and Brinkley, James F (1998) Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base.

Rosse, Cornelius and Shapiro, Linda G and Brinkley, James F (1998) The Digital Anatomist Foundational Model: Principles for Defining and Structuring Its Concept Domain.

This list was generated on Wed Aug 20 03:01:17 PDT 2014.