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Publications

Subject: SIG Publications


Number of items: 232.

(2012) A lightweight freezer management system for small laboratories.

Brinkley, James F. and Detwiler, Landon T. (2012) A Query Integrator and Manager for the Query Web.

Shaker, Ronald and Hertzenberg, Xenia and Brinkley, James (2012) Lightweight Data Integration Frameworks for Clinical Research.

Franklin, Joshua D and Guidry, Alicia F and Brinkley, James F (2011) A Partnership Approach for Electronic Data Capture in Small-Scale Clinical Trials.

Nichols, Nolan and Detwiler, Landon T and Franklin, Joshua D and Brinkley, James F (2011) Distributed Queries for Quality Control Checks in Clinical Trials.

Wynden, Rob and Solbrig, Harold and Tu, Samson and Brinkley, James F (2011) The Value of Value Sets.

Detwiler, Landon T and Brinkley, James F (2011) Value Sets via Ontology Views.

Shaw, Marianne and Detwiler, Landon T and Noy, N. F. and Brinkley, James F and Suciu, Dan (2011) vSPARQL: A View Definition Language for the Semantic Web.

Turner, Jessica A and Mejino, Jose L V and Brinkley, James F and Detwiler, Landon T and Lee, Hyo Jong and Martone, Maryann E and Rubin, Daniel L (2010) Application of neuroanatomical ontologies for neuroimaging data annotation.

Mejino, Jose L V and Detwiler, Landon T and Turner, Jessica A and Martone, Maryann E and Rubin, Daniel L and Brinkley, James F (2010) Enabling RadLex with the Foundational Model of Anatomy Ontology to Organize and Integrate Neuro-imaging Data.

Shen, Terry H and Detwiler, Landon T and Tarczy-Hornoch, Peter and Cadag, Eithon and Carlson, Christopher S (2010) Evaluation of probabilistic and logical inference for a SNP annotation system.

Oldenkamp, Paul (2010) Guide to Low Cost Electronic Data Capture Systems for Clinical Trials.

Brinkley, James F and Turner, Jessica A and Detwiler, Landon T and Mejino, Jose L V and Martone, Maryanne E and Rubin, Daniel L (2010) Intelligent Queries over BIRN Data using the Foundational Model of Anatomy and a Distributed Query-Based Data Integration System.

Detwiler, Landon T and Shaw, Marianne and Brinkley, James F (2010) Ontology View Query Management.

Nichols, Nolan and Perlmutter, Aaron and Mejino, Jose L V and Brinkley, James F (2010) Representing Neural Connectivity in the Foundational Model of Anatomy Ontology.

Dell, Nicola (2010) VIQUEN: A visual query engine for RDF.

Neal, Maxwell L and Gennari, John H and Arts, Theo and Cook, Daniel L (2009) Advances in semantic representation for multiscale biosimulation: a case study in merging models.

Cook, Daniel L and Mejino, Jose L V and Neal, Maxwell L and Gennari, John H (2009) Composite annotations: requirements for mapping multiscale data and models to biomedical ontologies.

Kalet, Ira and Mejino, Jose L V and Wang, Vania and Whipple, Mark and Brinkley, James F (2009) Content-specific auditing of a large scale anatomy ontology.

Detwiler, Landon T and Suciu, Dan and Franklin, Joshua D and Moore, Eider B and Poliakov, Andrew W and Lee, E Sally and Corina, David P and Ojemann, George A and Brinkley, James F (2009) Distributed XQuery-based integration and visualization of multimodality data: Application to brain mapping. .

Detwiler, Landon T and Gatterbauer, Wolfgang and Louie, Brenton and Suciu, Dan and Tarczy-Hornoch, Peter (2009) Integrating and Ranking Uncertain Scientific Data.

Franklin, Joshua D and Detwiler, Landon T and Brinkley, James F (2009) Lightweight distributed XML-based integration of translational data.

Detwiler, Landon T and Shaw, Marianne and Cook, Daniel L and Gennari, John H and Brinkley, James F (2009) Post-Coordinating Orthogonal Ontologies for Data Annotation.

Kalet, Ira J (2009) Principles of Biomedical Informatics.

Gu, Huanying and Wei, Duo and Mejino, Jose L V and Elhanan, Gai (2009) Relationship auditing of the FMA ontology.

Gennari, John H and Neal, Maxwell L and Mejino, Jose L V and Cook, Daniel L (2009) Using multiple reference ontologies: Managing composite annotations.

Cook, Daniel L and Mejino, Jose L V and Neal, Maxwell L and Gennari, John H (2008) Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology.

Guidry, Alicia F and Brinkley, James F and Anderson, Nicholas R and Tarczy-Hornoch, Peter (2008) Concept Mapping to Develop a Framework for Characterizing Electronic Data Capture (EDC) Systems.

Mejino, Jose L V and Rubin, Daniel L and Brinkley, James F (2008) FMA-RadLex: An Application Ontology of Radiological Anatomy derived from the Foundational Model of Anatomy Reference Ontology.

Shaw, Marianne and Detwiler, Landon T and Brinkley, James F and Suciu, Dan and Mejino, Jose L V (2008) Generating Application Ontologies from Reference Ontologies.

John H, Gennari and Maxwell L, Neal and Brian E, Carlson and Daniel L, Cook (2008) Integration of multi-scale biosimulation models via light-weight semantics.

Detwiler, Landon T and Suciu, Dan and Brinkley, James F (2008) Regular Paths in SparQL: Querying the NCI Thesaurus.

Puget, Antoine (2008) Spatial-Symbolic Query Engine in Anatomy.

Poliakov, Andrew V and X., Hertzenberg and Moore, Eider B and Corina, David P and Ojemann, George A and Brinkley, James F (2008) Unobtrusive Integration of Data Management With fMRI Analysis.

Franklin, Joshua D and Mejino, Jose L V and Detwiler, Landon T and Rubin, Daniel L and Brinkley, James F (2008) Web Service Access to Semantic Web Ontologies for Data Annotation.

Yngve, Gary and Brinkley, James F and Cook, Daniel L and Shapiro, Linda G (2007) A Model Browser for Biosimulation.

Rolfe, Sara (2007) An Independent Component Analysis Based Tool for Exploring Functional Connections in the Brain.

Mejino, Jose L V and Martin, Richard F and Detwiler, Landon T and Brinkley, James F (2007) Challenges in Reconciling Different Views of Neuroanatomy in a Reference Ontology of Anatomy.

Louie, Brenton and Detwiler, Landon T and Dalvi, Nilesh and Shaker, Ron and Tarczy-Hornoch, Peter and Suciu, Dan (2007) Incorporating Uncertainty Metrics into a General-Purpose Data Integration System.

Poliakov, Andrew V and McLaughlin, Judy and Valentine, Geoffry and Pitkanen, Ilona and Osterhout, Lee (2007) Intrinsic Variability of GM Density Maps and its Implications to VBM Studies.

Anderson, Nicholas R and Lee, E. Sally and Brockenbrough, J Scott and Minie, Mark E and Fuller, Sherrilynne and Brinkley, James F and Tarczy-Hornoch, Peter (2007) Issues in biomedical research data management and analysis: needs and barriers.

Moore, Eider B and Poliakov, Andrew V and Lincoln, Peter and Brinkley, James F (2007) MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data.

Detwiler, Landon T and Brinkley, James F (2007) Querying Non-Materialized Ontology Views.

Rosse, Cornelius and Mejino, Jose L V (2007) The Foundational Model of Anatomy Ontology.

Smith, Barry and Ashburner, Michael and Rosse, Cornelius and Bard, Jonathan and Bug, William and Ceusters, Werner and Goldberg, Louis J and Eilbeck, Karen and Ireland, Amelia and Mungall, Christopher J and OBI Consortium, The and Leontis, Neocles and Rocca‐Serra, a b and Ruttenberg, Alan and Sansone, Susanna-Assunta and Shah, Migam and Whetzel, Patricia L and Lewissi, Suzanna (2007) The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration.

Brinkley, James F and Ach, Daniel and Franklin, Joshua D and Anderson, Nicholas R and Stevens, Anne and Tarczy-Hornoch, Peter (2007) Tools for Clinical Trials Management: Handling the Norm and the Outliers.

Yngve, Gary (2007) Visualization for Biological Models, Simulation, and Ontologies .

Li, Xiang and Gennari, John H and Brinkley, James F (2007) XGI: A Graphical Interface for XQuery Creation.

Donnelly, Maureen and Bittner, Thomas and Rosse, Cornelius (2006) A formal theory for spatial representation and reasoning in biomedical ontologies.

Brinkley, James F and Suciu, Dan and Detwiler, Landon T and Gennari, John H and Rosse, Cornelius (2006) A framework for using reference ontologies as a foundation for the semantic web.

Travillian, Ravensara S and Diatchka, Kremena and Judge, Tejinder K and Wilamowska, Katarzyna and Shapiro, Linda G (2006) A Graphical User Interface for a Comparative Anatomy Information System: Design, Implementation and Usage Scenarios.

Benson, Noah and Whipple, Mark and Kalet, Ira J (2006) A Markov Model Approach to Predicting Regional Tumor Spread in the Lymphatic System of the Head and Neck.

Re, Chris and Brinkley, James F and Suciu, Dan (2006) A performant XQuery to SQL translator.

Detwiler, Landon T and Brinkley, James F (2006) Custom Views of Reference Ontologies.

Fong, Christine and Brinkley, James F (2006) Customizable Electronic Laboratory Online (CELO): A Web-based Data Management System Builder for Biomedical Research Laboratories.

Au, Alan and Li, Xiang and Gennari, John H (2006) Differences Among Cell-structure Ontologies: FMA, GO, & CCO.

Warren, Wayne and Agoncillo, Augusto V and Franklin, Joshua D and Brinkley, James F (2006) Intelligent web-based whole body visualization for anatomy education.

Brinkley, James F and Poliakov, Andrew V and Moore, Eider B and Detwiler, Landon T and Franklin, Joshua D and Corina, David P and Ojemann, George A (2006) Lightweight XML-based query, integration and visualization of distributed, multimodality brain imaging data .

Li, Hao and Gennari, John H and Brinkley, James F (2006) Model Driven Laboratory Information Management Systems.

Lincoln, Peter (2006) Surface Projection Method for Visualizing Volumetric Data.

Li, Xiang (2006) XGI: A Graphical Interface for XQuery Creation and XML Schema Visualization.

Bales, Nathan and Brinkley, James F and Lee, E. Sally and Mathur, Shobhit and Re, Chris and Suciu, Dan (2005) A Framework for XML-based Integration of Data, Visualization and Analysis in a Biomedical Domain.

Rosse, Cornelius and Kumar, Anand and Mejino, Jose L V and Cook, Daniel L and Detwiler, Landon T and Smith, Barry (2005) A Strategy for Improving and Integrating Biomedical Ontologies.

Smith, Barry and Mejino, Jose L V and Schultz, Stefan and Kumar, Anand and Rosse, Cornelius (2005) Anatomical information science.

Wang, Kelan and Tarczy-Hornoch, Peter and Shaker, Ron and Mork, Peter and Brinkley, James F (2005) BioMediator data integration: beyond genomics to neuroscience data.

Fong, Christine (2005) CELO: A System for Efficiently Building Informatics Solutions to Manage Biomedical Research Data.

Cho, Hansang (2005) Classification of functional brain data for multimedia retrieval.

Johnson, Clark L and Richards, Todd L and Poliakov, Andrew V and Aylward, Elizabeth H (2005) Contrast Masking and Differential fMRI Brain Responses Relative to a Rest Condition.

Corina, David P and Gibson, Erin K. and Martin, Richard F and Poliakov, Andrew V and Brinkley, James F and Ojemann, George A (2005) Dissociation of Action and Object Naming: Evidence From Cortical Stimulation Mapping.

Smith, Veronica S and Shapiro, Linda G and Hanlon, D. and Martin, Richard F and Brinkley, James F and Poliakov, Andrew V and Ojemann, George A and Corina, David P (2005) Evaluating spatial normalization methods for the human brain.

Detwiler, Landon T and Rosse, Cornelius (2005) Knowledge Base Version Reintegration.

Gennari, John H and Mork, Peter and Li, Hao (2005) Knowledge Transformations between Frame Systems and RDB Systems.

Warren, Wayne and Brinkley, James F (2005) Knowledge-Based, Interactive, Custom Anatomical Scene Creation for Medical Education: The Biolucida System.

Travillian, Ravensara S and Gennari, John H and Shapiro, Linda G (2005) Of Mice and Men: Design of a Comparative Anatomy Information System.

Smith, Barry and Kumar, Anand and Ceusters, Werner and Rosse, Cornelius (2005) On carcinomas and other pathological entities.

Shapiro, Linda G and Chung, Emily and Detwiler, Landon T and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2005) Processes and Problems in the Formative Evaluation of an Interface to the Foundational Model of Anatomy Knowledge Base.

Smith, Barry and Ceusters, Werner and Klagges, Bert and Köhler, Jacob and Kumar, Anand and Lomax, Jane and Mungall, Chris and Neuhaus, Fabian and Rector, Alan L and Rosse, Cornelius (2005) Relations in biomedical ontologies.

Poliakov, Andrew V and Albright, Evan M and Hinshaw, Kevin P and Corina, David P and Martin, Richard F and Brinkley, James F (2005) Server-based Approach to Web Visualization of Integrated Three-dimensional Brain Imaging Data.

Moore, Eider B and Poliakov, Andrew V and Brinkley, James F (2005) Web-enabled 3D Multimodality Brain Visualization in Java.

Detwiler, Landon T and Chung, Emily and Li, A. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius and Shapiro, Linda G (2004) A Relation-Centric Query Engine for the Foundational Model of Anatomy.

Distelhorst, G. M. and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (2004) An Improved Natural Language Interface to a Complex Anatomical Knowledge Base.

Detwiler, Landon T and Rosse, Cornelius and Shapiro, Linda G (2004) An Intuitive Graphical Query Interface for Protégé Knowledge Bases.

Fong, Christine and Rosse, Cornelius and Clark, J. I. and Shapiro, Linda G and Brinkley, James F (2004) An Ontology-based Image Repository for a Biomedical Research Lab.

Martin, Richard F and Brinkley, James F and Hertzenberg, X. and Poliakov, Andrew V and Corina, David P and Ojemann, George A (2004) Anatomical Parcellation of Cortical Language Sites.

Moore, Eider B and Poliakov, Andrew V and Brinkley, James F (2004) Brain Visualization in Java3D.

Re, Chris and Brinkley, James F and Hinshaw, Kevin P and Suciu, Dan (2004) Distributed XQuery.

Cook, Daniel L and Mejino, Jose L V and Rosse, Cornelius (2004) Evolution of a Foundational Model of Physiology: Symbolic Representation for Functional Bioinformatics.

Gennari, John H and Silberfein, Adam and Wiley, Jesse (2004) Integrating Genomic Knowledge Sources through an Anatomy Ontology.

Rickard, K. L. and Mejino, Jose L V and Martin, Richard F and Agoncillo, Augusto V and Rosse, Cornelius (2004) Problems and Solutions with Integrating Terminologies into Evolving Knowledge Bases.

Noy, N. F. and Musen, M. A. and Mejino, Jose L V and Rosse, Cornelius (2004) Pushing the Envelope: Challenges in a Frame-Based Representation of Human Anatomy.

Tang, Z. and Kadiyska, Y. and Suciu, Dan and Brinkley, James F (2004) Results Visualization in the XBrain XML Interface to a Relational Database.

Li, Hao and Brinkley, James F and Gennari, John H (2004) Semi-automatic Database Design for Neuroscience Experiment Management Systems.

Mejino, Jose L V and Rosse, Cornelius (2004) Symbolic modeling of structural relationships in the Foundational Model of Anatomy.

Smith, Barry and Rosse, Cornelius (2004) The Role of Foundational Relations in the Alignment of Biomedical Ontologies.

Hertzenberg, X. and Poliakov, Andrew V and Brinkley, James F (2004) Unobtrusive Integration of Data Management with fMRI Analysis.

Poliakov, Andrew V and Moore, Eider B and Brinkley, James F (2004) Use of Remote Surface Based Tools for Visualizing Integrated Brain Imaging Data.

Distelhorst, G. M. and Srivastava, V. and Rosse, Cornelius and Brinkley, James F (2003) A Prototype Natural Language Interface to a Large Complex Knowledge Base, the Foundational Model of Anatomy.

Rosse, Cornelius and Mejino, Jose L V (2003) A Reference Ontology for Bioinformatics: The Foundational Model of Anatomy.

Travillian, Ravensara S and Rosse, Cornelius and Shapiro, Linda G (2003) An Approach to the Anatomical Correlation of Species through the Foundational Model of Anatomy.

Tang, Z. and Kadiyska, Y. and Li, Hao and Suciu, Dan and Brinkley, James F (2003) Dynamic XML Based Exchange of Relational Data: Application to the Human Brain Project.

Detwiler, Landon T and Mejino, Jose L V and Rosse, Cornelius and Brinkley, James F (2003) Efficient Web-Based Navigation of the Foundational Model of Anatomy.

Mork, Peter and Brinkley, James F and Rosse, Cornelius (2003) OQAFMA Querying Agent for the Foundational Model of Anatomy: a Prototype for Providing Flexible and Efficient Access to Large Semantic Networks.

Kim, S. and Brinkley, James F and Rosse, Cornelius (2003) Profile of On-Line Anatomy Information Resources: Design and Instructional Implications.

Agoncillo, Augusto V and Mejino, Jose L V and Rickard, K. L. and Detwiler, Landon T and Rosse, Cornelius (2003) Proposed Classification of Cells in the Foundational Model of Anatomy.

Mejino, Jose L V and Agoncillo, Augusto V and Rickard, K. L. and Rosse, Cornelius (2003) Representing Complexity in Part-Whole Relationships within the Foundational Model of Anatomy.

Martin, Richard F and Rickard, K. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2003) The Evolving Neuroanatomical Component of the Foundational Model of Anatomy.

Mork, Peter and Suciu, Dan and Brinkley, James F and Rosse, Cornelius (2002) A Declarative Query Interface for Large Semantic Networks.

Shaker, R. and Mork, Peter and Barclay, M. and Tarczy-Hornoch, Peter (2002) A Rule Driven Bi-Directional Translation System for Remapping Queries and Result Sets Between a Mediated Schema and Heterogeneous Data Sources.

Kalet, Ira J and Whipple, Mark and Pessah, S. and Barker, J. and Austin-Seymour, M. M. and Shapiro, Linda G (2002) A Rule-based Model for Local and Regional Tumor Spread.

Brinkley, James F and Jakobovits, Rex M and Rosse, Cornelius (2002) An Online Image Management System for Anatomy Teaching.

Teng, C. C. and Austin-Seymour, M. M. and Barker, J. and Kalet, Ira J and Shapiro, Linda G and Whipple, Mark (2002) Head and Neck Lymph Node Region Delineation with 3-D CT Image Registration.

Brinkley, James F and Rosse, Cornelius (2002) Imaging and the Human Brain Project: a Review.

Brinkley, James F and Rosse, Cornelius (2002) Imaging Informatics and the Human Brain Project: the Role of Structure, Review.

Kinbar, K. and Hill, J. and Martin, Richard F and Mulligan, K. and Poliakov, Andrew V and Brinkley, James F and Lettich, E. and Ojemann, George A and Corina, David P (2002) Naming Deficits During Cortical Stimulation Mapping: Functional Specificity Reconsidered.

Mork, Peter and Shaker, R. and Halevy, A. and Tarczy-Hornoch, Peter (2002) PQL: A Declarative Query Language over Dynamic Biological Schemata.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2002) Server-Based Approach to Web Visualization of Integrated 3-D Medical Image Data.

Hinshaw, Kevin P and Poliakov, Andrew V and Martin, Richard F and Moore, Eider B and Shapiro, Linda G and Brinkley, James F (2002) Shape-Based Cortical Surface Segmentation for Visualization Brain Mapping.

Weng, C. and Kahn, M. and Gennari, John H (2002) Temporal Knowledge Representation for Scheduling Tasks in Clinical Trial Protocols.

Jakobovits, Rex M and Rosse, Cornelius and Brinkley, James F (2002) WIRM: an Open Source Toolkit for Building Biomedical Web Applications .

Corina, David P and Steury, K. and Poliakov, Andrew V and Martin, Richard F and Mulligan, K. A. and Maravilla, K. and Lettich, E. and Brinkley, James F and Inuoe, K. and Ojemann, George A (2001) A Comparison of Language Function Derived from Cortical Stimulation Mapping and FMRI: Data from Object Naming.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Mulligan, K. and Rosse, Cornelius (2001) A Next Generation Knowledge Source: Foundational Model of Neuroanatomy.

Jakobovits, Rex M and Brinkley, James F and Rosse, Cornelius and Weinberger, E. (2001) Enabling Clinicians, Researchers, and Educators to Build Custom Web-Based Biomedical Information Systems.

Rosse, Cornelius and Tuttle, M. S. (2001) Explaining the Brain to a Computer.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Rosse, Cornelius (2001) Foundational Model of Neuroanatomy: Implications for the Human Brain Project.

Lober, W. B. and Trigg, L. J. and Bliss, D. and Brinkley, James F (2001) IML: An Image Markup Language.

Kinbar, K. and Martin, Richard F and Hill, J. and Mulligan, K. and Poliakov, Andrew V and Brinkley, James F and Ojemann, George A and Corina, David P (2001) Naming Deficits During Cortical Stimulation Mapping: Functional Specificity Reconsidered.

Mejino, Jose L V and Noy, N. F. and Musen, M. A. and Brinkley, James F and Rosse, Cornelius (2001) Representation of Structural Relationships in the Foundational Model of Anatomy.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2001) Server-Based Approach to Web Visualization of Integrated 3-D Brain Mapping Data.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2001) Server-Based Approach to Web Visualization of Integrated 3-D Medical Image Data.

Michael, J. and Mejino, Jose L V and Rosse, Cornelius (2001) The Role of Definitions in Biomedical Concept Representation.

Campbell, B. and Brinkley, James F and Rosse, Cornelius (2001) The Virtual Anatomy Lab: a Hands-On Anatomy Learning Environment .

Lober, W. B. and Brinkley, James F (2000) A Personal Annotated Image Server.

Corina, David P and Poliakov, Andrew V and Steury, K. and Martin, Richard F and Brinkley, James F and Mulligan, K. A. and Ojemann, George A (2000) Correspondences between Language Cortex Identified by Cortical Stimulation Mapping and FMRI.

Sundsten, John W and Conley, D. M. and Ratiu, P. and Mulligan, K. A. and Rosse, Cornelius (2000) Digital Anatomist Web-Based Interactive Atlases.

Albright, Evan M (2000) Dynamic scene generation and software parallel rendering of anatomical structures.

Martin, Richard F and Poliakov, Andrew V and Mulligan, K. A. and Corina, David P and Ojemann, George A and Brinkley, James F (2000) Multi-Patient Mapping of Language Sites on 3-D Brain Models.

Martin, Richard F and Poliakov, Andrew V and Mulligan, K. A. and Kinbar, K. and Corina, David P and Maravilla, K. and Lettich, E. and Ojemann, George A and Brinkley, James F (2000) Multi-Patient Mapping of Language Sites on 3-D Brain Models.

Jakobovits, Rex M and Soderland, S. and Taira, R. K. and Brinkley, James F (2000) Requirements of a Web-Based Experiment Management System.

Hinshaw, Kevin P (2000) Seeing Structure: Using Knowledge to Reconstruct and Illustrate Anatomy.

Poliakov, Andrew V and Jakobovits, Rex M and Martin, Richard F and Corina, David P and Brinkley, James F (2000) Software Tools for Visualization and Analysis of Human Brain Data for Language Mapping.

Rosse, Cornelius (2000) Terminologia Anatomica; Considered from the Perspective of Next-Generation Knowledge Sources.

Jakobovits, Rex M and Soderland, S. G. and Tiara, R. K. and Brinkley, James F (2000) The Web-Interfacing Repository Manager: A Framework for Developing Web-Based Multimedia Applications for Medical Research.

Brinkley, James F and Albright, Evan M and Kim, S. and Mejino, Jose L V and Shapiro, Linda G and Rosse, Cornelius (2000) Visible Human, Construct Thyself: The Digital Anatomist Dynamic Scene Generator.

Rosse, Cornelius and Mejino, Jose L V and Shapiro, Linda G and Brinkley, James F (2000) Visible Human, Know Thyself: The Digital Anatomist Structural Abstraction.

Jakobovits, Rex M (2000) WIRM: A Perl-Based Application Server.

Lober, W. B. and Brinkley, James F (2000) XML-Based Image Annotation: PAIS - a Personal Annotated Image Server.

Corina, David P and Steury, K. R. and Mulligan, K. A. and Hinshaw, Kevin P and Poliakov, Andrew V and Brinkley, James F and Maravilla, K. R. and Ojemann, George A (1999) A Comparison of Language Cortex Indentified by Cortical Stimulation Mapping and FMRI Techniques.

Lober, W. B. and Brinkley, James F (1999) A Portable Image Annotation Tool for Web-Based Anatomy Atlases.

Kalet, Ira J and Wu, J. and Lease, M. and Austin-Seymour, M. M. and Brinkley, James F and Rosse, Cornelius (1999) Anatomical Information in Radiation Treatment Planning.

Rosse, Cornelius (1999) Anatomy Atlases.

Mejino, Jose L V and Rosse, Cornelius (1999) Conceptualization of Anatomical Spatial Entities in the Digital Anatomist Foundational Model.

Kim, S. and Brinkley, James F and Rosse, Cornelius (1999) Design Features of on-Line Anatomy Information Resources: A Comparison with the Digital Anatomist.

Brinkley, James F and Wong, B. A. and Hinshaw, Kevin P and Rosse, Cornelius (1999) Design of an Anatomy Information System.

Corina, David P and McBurney, S. L. and Dodrill, C. and Hinshaw, Kevin P and Brinkley, James F and Ojemann, George A (1999) Functional Roles of Broca's Area and SMG: Evidence from Cortical Stimulation Mapping in a Deaf Signer.

Agoncillo, Augusto V and Mejino, Jose L V and Rosse, Cornelius (1999) Influence of the Digital Anatomist Foundational Model on Traditional Representations of Anatomical Concepts.

Poliakov, Andrew V and Hinshaw, Kevin P and Corina, David P and Steury, K. R. and Maravilla, K. R. and Ojemann, George A and Mulligan, K. A. and Brinkley, James F (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping.

Poliakov, Andrew V and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping.

Hahn, J. S. and Burnside, E. and Brinkley, James F and Rosse, Cornelius and Musen, M. A. (1999) Representing the Digital Anatomist Foundational Model as a Protege Ontology.

Wong, B. A. and Rosse, Cornelius and Brinkley, James F (1999) Semi-Automatic Scene Generation Using the Digital Anatomist Foundational Model.

Stalder, D. S. and Brinkley, James F (1999) The Digital Anatomist Foundational Model Server.

Jakobovits, Rex M (1999) The web interfacing repository manager: a framework for developing web-based experiment management systems.

Bowden, D. M. and Robertson, J. E. and Martin, Richard F and Dubach, M. F. and Wu, J. S. and McLean, M. R. and Brinkley, James F (1999) Web-Tools for Neuroscience Based on Neuronames, a Template Brain Atlas, Edgewarp and Geographic Information Systems Software.

Wong, B. A. and Brinkley, James F (1998) Dynamic 3-D Scene Navigation in Web-Based Anatomy Atlases.

Hinshaw, Kevin P and Brinkley, James F (1998) Incorporating Constraint-Based Shape Models into an Interactive System for Functional Brain Mapping.

Corina, David P and McBurney, S. L. and Hinshaw, Kevin P and Brinkley, James F and Lettich, E. and Ojemann, George A (1998) Left Hemisphere Specialization for American Sign Language: A Cortical Stimulation Study.

Rosse, Cornelius and Mejino, Jose L V and Modayur, Bharath R and Jakobovits, Rex M and Hinshaw, Kevin P and Brinkley, James F (1998) Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base.

Jakobovits, Rex M and Brinkley, James F (1998) Query-by-Context: A Framework for Modelling and Navigating Multimedia Research Data.

Brinkley, James F and Rosse, Cornelius (1998) Requirements for an on-Line Knowledge-Based Anatomy Information System.

Rosse, Cornelius and Shapiro, Linda G and Brinkley, James F (1998) The Digital Anatomist Foundational Model: Principles for Defining and Structuring Its Concept Domain.

Neal, P. J. and Shapiro, Linda G and Rosse, Cornelius (1998) The Digital Anatomist Spatial Abstraction: A Scheme for the Spatial Description of Anatomical Features.

Mejino, Jose L V and Rosse, Cornelius (1998) The Potential of the Digital Anatomist Foundational Model for Assuring Consistency in UMLS Sources.

Brinkley, James F (1998) The Use of Anatomical Knowledge in Medical Imaging: An Overview of the University of Washington Structural Informatics Group.

Brinkley, James F and Myers, L. M. and Prothero, J. S. and Heil, G. H. and Tsuruda, J. S. and Maravilla, K. R. and Ojemann, George A and Rosse, Cornelius (1997) A Structural Information Framework for Brain Mapping.

Modayur, Bharath R and Jakobovits, Rex M and Maravilla, K. and Ojemann, George A and Brinkley, James F (1997) Evaluation of a Visualization-Based Approach to Functional Brain Mapping.

Modayur, Bharath R and Ojemann, George A and Lettich, E. and Jakobovits, Rex M and Sundsten, John W and Brinkley, James F (1997) Information System for Mapping and Studying Cortical Language Organization.

Jakobovits, Rex M and Brinkley, James F (1997) Managing Medical Research Data with a Web-Interfacing Repository Manager.

Hinshaw, Kevin P and Brinkley, James F (1997) Shape-Based Interactive Three-Dimensional Medical Image Segmentation.

Brinkley, James F and Prothero, J. S. (1997) Slisp: A Flexible Software Toolkit for Hybrid, Embedded and Distributed Applications.

Rosse, Cornelius (1997) Study Guide for Gross Anatomy and Embryology.

Brinkley, James F and Rosse, Cornelius (1997) The Digital Anatomist Distributed Framework and Its Applications to Knowledge Based Medical Imaging.

Brinkley, James F and Bradley, S. W. and Sundsten, John W and Rosse, Cornelius (1997) The Digital Anatomist Information System and Its Use in the Generation and Delivery of Web-Based Anatomy Atlases.

Brinkley, James F and Bradley, S. W. and Sundsten, John W and Rosse, Cornelius (1997) The Digital Anatomist Information System and Its Use in the Generation and Delivery of Web-Based Anatomy Atlases.

Hinshaw, Kevin P and Brinkley, James F (1997) Using 3-D Shape Models to Guide Segmentation of MR Brain Images.

Modayur, Bharath R and Prothero, J. and Ojemann, George A and Maravilla, K. and Brinkley, James F (1997) Visualization-Based Mapping of Language Function in the Brain.

Dailey, D. J. and Brinkley, James F (1996) A Metric for Quantifying Response Time in a Browser Application.

Jakobovits, Rex M and Lewis, L. M. and Ahrens, J. P. and Shapiro, Linda G and Tanimoto, S. L. and Brinkley, James F (1996) A Visual Database Environment for Scientific Research.

Jakobovits, Rex M and Modayur, Bharath R and Brinkley, James F (1996) A Web-Based Repository Manager for Brain Mapping Data.

Modayur, Bharath R and Prothero, J. and Rosse, Cornelius and Jakobovits, Rex M and Brinkley, James F (1996) Visualization and Mapping of Neurosurgical Functional Data onto a 3-D MR-Based Model of the Brain Surface.

Brinkley, James F and Eno, Kraig R and Sundsten, John W and Conley, D. M. and Rosse, Cornelius (1995) A Distributed Framework for Distance Learning in Anatomy: The Digital Anatomist Interactive Atlas.

Graney, D. and Conley, D. and Sundsten, John W and Ratiu, P. and Rauschning, Wolfgang and Brinkley, James F and Rosse, Cornelius (1995) Digital Anatomist Interactive Atlases.

Rosse, Cornelius and Said, M. Ben and Eno, Kraig R and Brinkley, James F (1995) Enhancements of Anatomical Information in UMLS Knowledge Sources.

Hinshaw, Kevin P and Altman, R. B. and Brinkley, James F (1995) Shape-Based Models for Interactive Segmentation of Medical Images.

Conley, D. M. and Sundsten, John W and Ratiu, P. and Rauschning, Wolfgang and Rosse, Cornelius (1995) The Digital Anatomist Series: 3-D, Segmented, Dynamic Atlases of Body Regions.

Rosse, Cornelius (1995) The Potential of Computerized Representations of Anatomy in the Training of Health Care Providers.

Myers, L. M. and Brinkley, James F (1995) Visualization of Brain Surface Features Using Registered Partially Segmented MRI Scans.

Myers, L. M. and Prothero, J. S. and Brinkley, James F (1995) Volume Rendering of Multi-Spectral MR Data for Brain Language Site Mapping.

Bradley, S. W. and Rosse, Cornelius and Brinkley, James F (1995) Web-Based Access to an Online Atlas of Anatomy: The Digital Anatomist Common Gateway Interface.

Brinkley, James F (1994) A Distributed, Object-Oriented Framework for Medical Image Management and Analysis: Application to Evaluation of Medical Image Segmentation Techniques.

Shapiro, Linda G and Tanimoto, S. L. and Brinkley, James F and Ahrens, J. P. and Jakobovits, Rex M and Lewis, L. M. (1994) A Visual Database System for Data and Experiment Management in Model-Based Computer Vision.

Ratiu, P. and Rosse, Cornelius (1994) Animations of Knee Anatomy.

Conley, D. and Rosse, Cornelius (1994) Animations of Thoracic Viscera.

Brinkley, James F (1994) Educational Systems:Synopsis.

Sundsten, John W (1994) Interactive Atlas of the Brain.

Conley, D. and Rosse, Cornelius (1994) Interactive Atlas of Thoracic Viscera.

Dailey, D. J. and Eno, Kraig R and Brinkley, James F (1994) Performance Evaluation of a Distance Learning Program.

Brinkley, James F (1994) The Digital Anatomist Project.

Brinkley, James F (1993) A Flexible, Generic Model for Anatomic Shape: Application to Interactive Two-Dimensional Medical Image Segmentation and Matching.

Conley, D. M. and Brinkley, James F and Rauschning, Wolfgang and Rosse, Cornelius (1993) A Multimedia Approach to the Study of the Mediastinum Utilizing a Computer-Generated Three-Dimensional Model.

Dailey, D. J. and Eno, Kraig R and Zick, G. L. and Brinkley, James F (1993) A Network Model for Wide Area Access to Structural Information.

Sundsten, John W and Brinkley, James F and Eno, Kraig R (1993) Digital Anatomist Browser: Teaching Neuroanatomy with the Use of Digital and Video-Disc Images Accessed by Computer.

Brinkley, James F and Eno, Kraig R and Sundsten, John W (1993) Knowledge-Based Client-Server Approach to Structural Information Retrieval: The Digital Anatomist Browser.

Altman, R. B. and Brinkley, James F (1993) Probabilistic Constraint Satisfaction with Structural Models: Application to Organ Modelling by Radial Contours.

Brinkley, James F (1993) The Potential for Three-Dimensional Ultrasound.

Conley, D. M. and Kastella, K. G. and Sundsten, John W and Rauschning, Wolfgang and Rosse, Cornelius (1992) Computer-Generated Three-Dimensional Reconstruction of the Mediastinum Correlated with Sectional and Radiological Anatomy.

Brinkley, James F (1992) Hierarchical Geometric Constraint Networks as a Representation for Spatial Structural Knowledge.

Sundsten, John W and Kastella, K. G. (1992) Human Brain Animations.

Eno, Kraig R and Sundsten, John W and Brinkley, James F (1991) A Multimedia Anatomy Browser Incorporating a Knowledge Base and 3-D Images.

Sundsten, John W and Brinkley, James F and Eno, Kraig R and Harris, R. M. and Kastella, K. G. (1991) Interactive Use of Videodisc Animations of Computer-Reconstructed Human Brain.

Brinkley, James F (1991) Structural Informatics and Its Applications in Medicine and Biology.

Sundsten, John W and Kastella, K. G. and Conley, D. M. (1991) Videodisc Animation of 3d Computer Reconstructions of the Human Brain.

Greenes, R. G. and Brinkley, James F (1990) Radiology Applications.

Rosse, Cornelius and Brinkley, James F and Prothero, J. (1990) Structural Informatics: The Representation of Anatomical Knowledge in Computer Readable Form.

Brinkley, James F and Prothero, J. S. and Prothero, John W and Rosse, Cornelius (1989) A Framework for the Design of Knowledge-Based Systems in Structural Biology.

Prothero, J. S. and Prothero, John W (1989) A Software Package in C for Interactive 3d Reconstruction and Display of Anatomical Objects from Serial Section Data.

Brinkley, James F and Altman, R. B. and Duncan, B. S. and Buchanan, B. G. and Jardetzky, O. (1988) Heuristic Refinement Method for the Derivation of Protein Solution Structures: Validation on Cytochrome B562.

Brinkley, James F (1988) Representing Biologic Objects as Geometric Constraint Networks.

Stimac, G. K. and Sundsten, John W and Prothero, J. S. and Prothero, John W and Gerlach, R. and Sorbonne, R. (1988) Three-Dimensional Contour Surfacing of the Skull, Face, and Brain from CT and MR Images and from Anatomic Sections.

DeVito, J. L. and Graham, J. and Schultz, G. and Sundsten, John W and Prothero, John W (1986) Morphometry of the Developing Brain in Macaca Nemestrina.

Prothero, J. S. and Prothero, John W (1986) Three-Dimensional Reconstruction from Serial Sections IV. The Reassembly Problem.

Prothero, J. S. and Riggins, M. and Lindsay, A. and Harris, R. and Prothero, John W (1985) Three-Dimensional Reconstruction from Serial Sections III. Autoscan, a Software Package in Fortran for Semiautomated Photomicrography.

Sundsten, John W and Prothero, John W (1983) Three-Dimensional Reconstruction from Serial Sections: II. A Microcomputer-Based Facilty for Rapid Data Collection.

Prothero, J. S. and Prothero, John W (1982) Three-Dimensional Reconstruction from Serial Sections: I. A Portable Microcomputer-Based Software Package in Fortran..

This list was generated on Fri Aug 22 16:01:20 PDT 2014.