Publication Type: Conference Paper

Number of items: 101.

Louie, Brenton and Detwiler, Landon T and Dalvi, Nilesh and Shaker, Ron and Tarczy-Hornoch, Peter and Suciu, Dan (2007) Incorporating Uncertainty Metrics into a General-Purpose Data Integration System.

Brinkley, James F and Suciu, Dan and Detwiler, Landon T and Gennari, John H and Rosse, Cornelius (2006) A framework for using reference ontologies as a foundation for the semantic web.

Li, Hao and Gennari, John H and Brinkley, James F (2006) Model Driven Laboratory Information Management Systems.

Warren, Wayne and Agoncillo, Augusto V and Franklin, Joshua D and Brinkley, James F (2006) Intelligent web-based whole body visualization for anatomy education.

Travillian, Ravensara S and Diatchka, Kremena and Judge, Tejinder K and Wilamowska, Katarzyna and Shapiro, Linda G (2006) A Graphical User Interface for a Comparative Anatomy Information System: Design, Implementation and Usage Scenarios.

Au, Alan and Li, Xiang and Gennari, John H (2006) Differences Among Cell-structure Ontologies: FMA, GO, & CCO.

Benson, Noah and Whipple, Mark and Kalet, Ira (2006) A Markov Model Approach to Predicting Regional Tumor Spread in the Lymphatic System of the Head and Neck.

Cho, Hansang and Corina, David P and Brinkley, James F and Ojemann, George A and Shapiro, Linda G (2005) A New Template Matching Method using Variance Estimation for Spike Sorting.

Rosse, Cornelius and Kumar, Anand and Mejino, Jose L V and Cook, Daniel L and Detwiler, Landon T and Smith, Barry (2005) A Strategy for Improving and Integrating Biomedical Ontologies.

Detwiler, Landon T and Rosse, Cornelius (2005) Knowledge Base Version Reintegration.

Bales, Nathan and Brinkley, James F and Lee, E. Sally and Mathur, Shobhit and Re, Chris and Suciu, Dan (2005) A Framework for XML-based Integration of Data, Visualization and Analysis in a Biomedical Domain.

Smith, Barry and Mejino, Jose L V and Schultz, Stefan and Kumar, Anand and Rosse, Cornelius (2005) Anatomical information science.

Warren, Wayne and Brinkley, James F (2005) Knowledge-Based, Interactive, Custom Anatomical Scene Creation for Medical Education: The Biolucida System.

Gennari, John H and Mork, Peter and Li, Hao (2005) Knowledge Transformations between Frame Systems and RDB Systems.

Wang, Kelan and Tarczy-Hornoch, Peter and Shaker, Ron and Mork, Peter and Brinkley, James F (2005) BioMediator data integration: beyond genomics to neuroscience data.

Travillian, Ravensara S and Gennari, John H and Shapiro, Linda G (2005) Of Mice and Men: Design of a Comparative Anatomy Information System.

Smith, Veronica S and Shapiro, Linda G and Hanlon, D. and Martin, Richard F and Brinkley, James F and Poliakov, Andrew V and Ojemann, George A and Corina, David P (2005) Evaluating spatial normalization methods for the human brain.

Smith, Barry and Rosse, Cornelius (2004) The Role of Foundational Relations in the Alignment of Biomedical Ontologies.

Detwiler, Landon T and Chung, Emily and Li, A. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius and Shapiro, Linda G (2004) A Relation-Centric Query Engine for the Foundational Model of Anatomy.

Mejino, Jose L V and Rosse, Cornelius (2004) Symbolic modeling of structural relationships in the Foundational Model of Anatomy.

Re, Chris and Brinkley, James F and Hinshaw, Kevin P and Suciu, Dan (2004) Distributed XQuery.

Gennari, John H and Silberfein, Adam and Wiley, Jesse (2004) Integrating Genomic Knowledge Sources through an Anatomy Ontology.

Rickard, K. L. and Mejino, Jose L V and Martin, Richard F and Agoncillo, Augusto V and Rosse, Cornelius (2004) Problems and Solutions with Integrating Terminologies into Evolving Knowledge Bases.

Cook, Daniel L and Mejino, Jose L V and Rosse, Cornelius (2004) Evolution of a Foundational Model of Physiology: Symbolic Representation for Functional Bioinformatics.

Detwiler, Landon T and Rosse, Cornelius and Shapiro, Linda G (2004) An Intuitive Graphical Query Interface for Protégé Knowledge Bases.

Travillian, Ravensara S and Rosse, Cornelius and Shapiro, Linda G (2003) An Approach to the Anatomical Correlation of Species through the Foundational Model of Anatomy.

Distelhorst, G. M. and Srivastava, V. and Rosse, Cornelius and Brinkley, James F (2003) A Prototype Natural Language Interface to a Large Complex Knowledge Base, the Foundational Model of Anatomy.

Mejino, Jose L V and Agoncillo, Augusto V and Rickard, K. L. and Rosse, Cornelius (2003) Representing Complexity in Part-Whole Relationships within the Foundational Model of Anatomy.

Tang, Z. and Kadiyska, Y. and Li, Hao and Suciu, Dan and Brinkley, James F (2003) Dynamic XML Based Exchange of Relational Data: Application to the Human Brain Project.

Weng, C. and Kahn, M. and Gennari, John H (2002) Temporal Knowledge Representation for Scheduling Tasks in Clinical Trial Protocols.

Mork, Peter and Shaker, R. and Halevy, A. and Tarczy-Hornoch, Peter (2002) PQL: A Declarative Query Language over Dynamic Biological Schemata.

Shaker, R. and Mork, Peter and Barclay, M. and Tarczy-Hornoch, Peter (2002) A Rule Driven Bi-Directional Translation System for Remapping Queries and Result Sets Between a Mediated Schema and Heterogeneous Data Sources.

Kalet, I. J. and Whipple, M. and Pessah, S. and Barker, J. and Austin-Seymour, M. M. and Shapiro, Linda G (2002) A Rule-based Model for Local and Regional Tumor Spread.

Teng, C. C. and Austin-Seymour, M. M. and Barker, J. and Kalet, I. J. and Shapiro, Linda G and Whipple, M. (2002) Head and Neck Lymph Node Region Delineation with 3-D CT Image Registration.

Rosse, Cornelius and Tuttle, M. S. (2001) Explaining the Brain to a Computer.

Campbell, B. and Brinkley, James F and Rosse, Cornelius (2001) The Virtual Anatomy Lab: a Hands-On Anatomy Learning Environment .

Michael, J. and Mejino, Jose L V and Rosse, Cornelius (2001) The Role of Definitions in Biomedical Concept Representation.

Jakobovits, Rex M and Brinkley, James F and Rosse, Cornelius and Weinberger, E. (2001) Enabling Clinicians, Researchers, and Educators to Build Custom Web-Based Biomedical Information Systems.

Kinbar, K. and Martin, Richard F and Hill, J. and Mulligan, K. and Poliakov, Andrew V and Brinkley, James F and Ojemann, George A and Corina, David P (2001) Naming Deficits During Cortical Stimulation Mapping: Functional Specificity Reconsidered.

Lober, W. B. and Trigg, L. J. and Bliss, D. and Brinkley, James F (2001) IML: An Image Markup Language.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Mulligan, K. and Rosse, Cornelius (2001) A Next Generation Knowledge Source: Foundational Model of Neuroanatomy.

Martin, Richard F and Mejino, Jose L V and Bowden, D. M. and Brinkley, James F and Rosse, Cornelius (2001) Foundational Model of Neuroanatomy: Implications for the Human Brain Project.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2001) Server-Based Approach to Web Visualization of Integrated 3-D Medical Image Data.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2001) Server-Based Approach to Web Visualization of Integrated 3-D Brain Mapping Data.

Brinkley, James F and Albright, Evan M and Kim, S. and Mejino, Jose L V and Shapiro, Linda G and Rosse, Cornelius (2000) Visible Human, Construct Thyself: The Digital Anatomist Dynamic Scene Generator.

Corina, David P and Poliakov, Andrew V and Steury, K. and Martin, Richard F and Brinkley, James F and Mulligan, K. A. and Ojemann, George A (2000) Correspondences between Language Cortex Identified by Cortical Stimulation Mapping and FMRI.

Jakobovits, Rex M and Soderland, S. and Taira, R. K. and Brinkley, James F (2000) Requirements of a Web-Based Experiment Management System.

Jakobovits, Rex M and Soderland, S. G. and Tiara, R. K. and Brinkley, James F (2000) The Web-Interfacing Repository Manager: A Framework for Developing Web-Based Multimedia Applications for Medical Research.

Lober, W. B. and Brinkley, James F (2000) A Personal Annotated Image Server.

Martin, Richard F and Poliakov, Andrew V and Mulligan, K. A. and Corina, David P and Ojemann, George A and Brinkley, James F (2000) Multi-Patient Mapping of Language Sites on 3-D Brain Models.

Martin, Richard F and Poliakov, Andrew V and Mulligan, K. A. and Kinbar, K. and Corina, David P and Maravilla, K. and Lettich, E. and Ojemann, George A and Brinkley, James F (2000) Multi-Patient Mapping of Language Sites on 3-D Brain Models.

Poliakov, Andrew V and Jakobovits, Rex M and Martin, Richard F and Corina, David P and Brinkley, James F (2000) Software Tools for Visualization and Analysis of Human Brain Data for Language Mapping.

Rosse, Cornelius and Mejino, Jose L V and Shapiro, Linda G and Brinkley, James F (2000) Visible Human, Know Thyself: The Digital Anatomist Structural Abstraction.

Agoncillo, Augusto V and Mejino, Jose L V and Rosse, Cornelius (1999) Influence of the Digital Anatomist Foundational Model on Traditional Representations of Anatomical Concepts.

Stalder, D. S. and Brinkley, James F (1999) The Digital Anatomist Foundational Model Server.

Wong, B. A. and Rosse, Cornelius and Brinkley, James F (1999) Semi-Automatic Scene Generation Using the Digital Anatomist Foundational Model.

Poliakov, Andrew V and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping.

Bowden, D. M. and Robertson, J. E. and Martin, Richard F and Dubach, M. F. and Wu, J. S. and McLean, M. R. and Brinkley, James F (1999) Web-Tools for Neuroscience Based on Neuronames, a Template Brain Atlas, Edgewarp and Geographic Information Systems Software.

Corina, David P and Steury, K. R. and Mulligan, K. A. and Hinshaw, Kevin P and Poliakov, Andrew V and Brinkley, James F and Maravilla, K. R. and Ojemann, George A (1999) A Comparison of Language Cortex Indentified by Cortical Stimulation Mapping and FMRI Techniques.

Kalet, I. J. and Wu, J. and Lease, M. and Austin-Seymour, M. M. and Brinkley, James F and Rosse, Cornelius (1999) Anatomical Information in Radiation Treatment Planning.

Kim, S. and Brinkley, James F and Rosse, Cornelius (1999) Design Features of on-Line Anatomy Information Resources: A Comparison with the Digital Anatomist.

Mejino, Jose L V and Rosse, Cornelius (1999) Conceptualization of Anatomical Spatial Entities in the Digital Anatomist Foundational Model.

Poliakov, Andrew V and Hinshaw, Kevin P and Corina, David P and Steury, K. R. and Maravilla, K. R. and Ojemann, George A and Mulligan, K. A. and Brinkley, James F (1999) Integration and Visualization of Multimodality Brain Data for Language Mapping.

Brinkley, James F (1998) The Use of Anatomical Knowledge in Medical Imaging: An Overview of the University of Washington Structural Informatics Group.

Brinkley, James F and Rosse, Cornelius (1998) Requirements for an on-Line Knowledge-Based Anatomy Information System.

Corina, David P and McBurney, S. L. and Hinshaw, Kevin P and Brinkley, James F and Lettich, E. and Ojemann, George A (1998) Left Hemisphere Specialization for American Sign Language: A Cortical Stimulation Study.

Hinshaw, Kevin P and Brinkley, James F (1998) Incorporating Constraint-Based Shape Models into an Interactive System for Functional Brain Mapping.

Mejino, Jose L V and Rosse, Cornelius (1998) The Potential of the Digital Anatomist Foundational Model for Assuring Consistency in UMLS Sources.

Neal, P. J. and Shapiro, Linda G and Rosse, Cornelius (1998) The Digital Anatomist Spatial Abstraction: A Scheme for the Spatial Description of Anatomical Features.

Rosse, Cornelius and Shapiro, Linda G and Brinkley, James F (1998) The Digital Anatomist Foundational Model: Principles for Defining and Structuring Its Concept Domain.

Brinkley, James F and Myers, L. M. and Prothero, J. S. and Heil, G. H. and Tsuruda, J. S. and Maravilla, K. R. and Ojemann, George A and Rosse, Cornelius (1997) A Structural Information Framework for Brain Mapping.

Hinshaw, Kevin P and Brinkley, James F (1997) Shape-Based Interactive Three-Dimensional Medical Image Segmentation.

Hinshaw, Kevin P and Brinkley, James F (1997) Using 3-D Shape Models to Guide Segmentation of MR Brain Images.

Jakobovits, Rex M and Brinkley, James F (1997) Managing Medical Research Data with a Web-Interfacing Repository Manager.

Modayur, Bharath R and Jakobovits, Rex M and Maravilla, K. and Ojemann, George A and Brinkley, James F (1997) Evaluation of a Visualization-Based Approach to Functional Brain Mapping.

Modayur, Bharath R and Ojemann, George A and Lettich, E. and Jakobovits, Rex M and Sundsten, John W and Brinkley, James F (1997) Information System for Mapping and Studying Cortical Language Organization.

Jakobovits, Rex M and Modayur, Bharath R and Brinkley, James F (1996) A Web-Based Repository Manager for Brain Mapping Data.

Modayur, Bharath R and Prothero, J. and Rosse, Cornelius and Jakobovits, Rex M and Brinkley, James F (1996) Visualization and Mapping of Neurosurgical Functional Data onto a 3-D MR-Based Model of the Brain Surface.

Bradley, S. W. and Rosse, Cornelius and Brinkley, James F (1995) Web-Based Access to an Online Atlas of Anatomy: The Digital Anatomist Common Gateway Interface.

Myers, L. M. and Brinkley, James F (1995) Visualization of Brain Surface Features Using Registered Partially Segmented MRI Scans.

Myers, L. M. and Prothero, J. S. and Brinkley, James F (1995) Volume Rendering of Multi-Spectral MR Data for Brain Language Site Mapping.

Rosse, Cornelius and Said, M. Ben and Eno, Kraig R and Brinkley, James F (1995) Enhancements of Anatomical Information in UMLS Knowledge Sources.

Brinkley, James F (1994) A Distributed, Object-Oriented Framework for Medical Image Management and Analysis: Application to Evaluation of Medical Image Segmentation Techniques.

Shapiro, Linda G and Tanimoto, S. L. and Brinkley, James F and Ahrens, J. P. and Jakobovits, Rex M and Lewis, L. M. (1994) A Visual Database System for Data and Experiment Management in Model-Based Computer Vision.

Brinkley, James F (1994) Educational Systems:Synopsis.

Brinkley, James F (1994) The Digital Anatomist Project.

Dailey, D. J. and Eno, Kraig R and Brinkley, James F (1994) Performance Evaluation of a Distance Learning Program.

Sundsten, John W and Brinkley, James F and Eno, Kraig R (1993) Digital Anatomist Browser: Teaching Neuroanatomy with the Use of Digital and Video-Disc Images Accessed by Computer.

Altman, R. B. and Brinkley, James F (1993) Probabilistic Constraint Satisfaction with Structural Models: Application to Organ Modelling by Radial Contours.

Conley, D. M. and Brinkley, James F and Rauschning, Wolfgang and Rosse, Cornelius (1993) A Multimedia Approach to the Study of the Mediastinum Utilizing a Computer-Generated Three-Dimensional Model.

Dailey, D. J. and Eno, Kraig R and Zick, G. L. and Brinkley, James F (1993) A Network Model for Wide Area Access to Structural Information.

Brinkley, James F (1993) The Potential for Three-Dimensional Ultrasound.

Brinkley, James F (1992) Hierarchical Geometric Constraint Networks as a Representation for Spatial Structural Knowledge.

Sundsten, John W and Brinkley, James F and Eno, Kraig R and Harris, R. M. and Kastella, K. G. (1991) Interactive Use of Videodisc Animations of Computer-Reconstructed Human Brain.

Eno, Kraig R and Sundsten, John W and Brinkley, James F (1991) A Multimedia Anatomy Browser Incorporating a Knowledge Base and 3-D Images.

Greenes, R. G. and Brinkley, James F (1990) Radiology Applications.

Rosse, Cornelius and Brinkley, James F and Prothero, J. (1990) Structural Informatics: The Representation of Anatomical Knowledge in Computer Readable Form.

Brinkley, James F and Prothero, J. S. and Prothero, John W and Rosse, Cornelius (1989) A Framework for the Design of Knowledge-Based Systems in Structural Biology.

Prothero, J. S. and Prothero, John W (1989) A Software Package in C for Interactive 3d Reconstruction and Display of Anatomical Objects from Serial Section Data.

Brinkley, James F (1988) Representing Biologic Objects as Geometric Constraint Networks.

DeVito, J. L. and Graham, J. and Schultz, G. and Sundsten, John W and Prothero, John W (1986) Morphometry of the Developing Brain in Macaca Nemestrina.

This list was generated on Sun Jul 20 09:02:08 PDT 2008.