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Publications

Publication Type: Conference Poster

Number of items: 43.

Shaker, Ronald and Hertzenberg, Xenia and Brinkley, James (2012) Lightweight Data Integration Frameworks for Clinical Research.

Detwiler, Landon T and Brinkley, James F (2011) Value Sets via Ontology Views.

Nichols, Nolan and Detwiler, Landon T and Franklin, Joshua D and Brinkley, James F (2011) Distributed Queries for Quality Control Checks in Clinical Trials.

Nichols, Nolan and Perlmutter, Aaron and Mejino, Jose L V and Brinkley, James F (2010) Representing Neural Connectivity in the Foundational Model of Anatomy Ontology.

Mejino, Jose L V and Detwiler, Landon T and Turner, Jessica A and Martone, Maryann E and Rubin, Daniel L and Brinkley, James F (2010) Enabling RadLex with the Foundational Model of Anatomy Ontology to Organize and Integrate Neuro-imaging Data.

Detwiler, Landon T and Shaw, Marianne and Brinkley, James F (2010) Ontology View Query Management.

Brinkley, James F and Turner, Jessica A and Detwiler, Landon T and Mejino, Jose L V and Martone, Maryanne E and Rubin, Daniel L (2010) Intelligent Queries over BIRN Data using the Foundational Model of Anatomy and a Distributed Query-Based Data Integration System.

Detwiler, Landon T and Shaw, Marianne and Cook, Daniel L and Gennari, John H and Brinkley, James F (2009) Post-Coordinating Orthogonal Ontologies for Data Annotation.

Franklin, Joshua D and Detwiler, Landon T and Brinkley, James F (2009) Lightweight distributed XML-based integration of translational data.

Guidry, Alicia F and Brinkley, James F and Anderson, Nicholas R and Tarczy-Hornoch, Peter (2008) Concept Mapping to Develop a Framework for Characterizing Electronic Data Capture (EDC) Systems.

Franklin, Joshua D and Mejino, Jose L V and Detwiler, Landon T and Rubin, Daniel L and Brinkley, James F (2008) Web Service Access to Semantic Web Ontologies for Data Annotation.

Poliakov, Andrew V and McLaughlin, Judy and Valentine, Geoffry and Pitkanen, Ilona and Osterhout, Lee (2007) Intrinsic Variability of GM Density Maps and its Implications to VBM Studies.

Detwiler, Landon T and Brinkley, James F (2007) Querying Non-Materialized Ontology Views.

Mejino, Jose L V and Martin, Richard F and Detwiler, Landon T and Brinkley, James F (2007) Challenges in Reconciling Different Views of Neuroanatomy in a Reference Ontology of Anatomy.

Li, Xiang and Gennari, John H and Brinkley, James F (2007) XGI: A Graphical Interface for XQuery Creation.

Brinkley, James F and Ach, Daniel and Franklin, Joshua D and Anderson, Nicholas R and Stevens, Anne and Tarczy-Hornoch, Peter (2007) Tools for Clinical Trials Management: Handling the Norm and the Outliers.

Yngve, Gary and Brinkley, James F and Cook, Daniel L and Shapiro, Linda G (2007) A Model Browser for Biosimulation.

Detwiler, Landon T and Brinkley, James F (2006) Custom Views of Reference Ontologies.

Fong, Christine and Brinkley, James F (2006) Customizable Electronic Laboratory Online (CELO): A Web-based Data Management System Builder for Biomedical Research Laboratories.

Moore, Eider B and Poliakov, Andrew V and Brinkley, James F (2005) Web-enabled 3D Multimodality Brain Visualization in Java.

Johnson, Clark L and Richards, Todd L and Poliakov, Andrew V and Aylward, Elizabeth H (2005) Contrast Masking and Differential fMRI Brain Responses Relative to a Rest Condition.

Distelhorst, G. M. and Hinshaw, Kevin P and Rosse, Cornelius and Brinkley, James F (2004) An Improved Natural Language Interface to a Complex Anatomical Knowledge Base.

Fong, Christine and Rosse, Cornelius and Clark, J. I. and Shapiro, Linda G and Brinkley, James F (2004) An Ontology-based Image Repository for a Biomedical Research Lab.

Li, Hao and Brinkley, James F and Gennari, John H (2004) Semi-automatic Database Design for Neuroscience Experiment Management Systems.

Tang, Z. and Kadiyska, Y. and Suciu, Dan and Brinkley, James F (2004) Results Visualization in the XBrain XML Interface to a Relational Database.

Poliakov, Andrew V and Moore, Eider B and Brinkley, James F (2004) Use of Remote Surface Based Tools for Visualizing Integrated Brain Imaging Data.

Moore, Eider B and Poliakov, Andrew V and Brinkley, James F (2004) Brain Visualization in Java3D.

Hertzenberg, X. and Poliakov, Andrew V and Brinkley, James F (2004) Unobtrusive Integration of Data Management with fMRI Analysis.

Martin, Richard F and Brinkley, James F and Hertzenberg, X. and Poliakov, Andrew V and Corina, David P and Ojemann, George A (2004) Anatomical Parcellation of Cortical Language Sites.

Martin, Richard F and Rickard, K. and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2003) The Evolving Neuroanatomical Component of the Foundational Model of Anatomy.

Detwiler, Landon T and Mejino, Jose L V and Rosse, Cornelius and Brinkley, James F (2003) Efficient Web-Based Navigation of the Foundational Model of Anatomy.

Agoncillo, Augusto V and Mejino, Jose L V and Rickard, K. L. and Detwiler, Landon T and Rosse, Cornelius (2003) Proposed Classification of Cells in the Foundational Model of Anatomy.

Brinkley, James F and Jakobovits, Rex M and Rosse, Cornelius (2002) An Online Image Management System for Anatomy Teaching.

Mork, Peter and Suciu, Dan and Brinkley, James F and Rosse, Cornelius (2002) A Declarative Query Interface for Large Semantic Networks.

Mejino, Jose L V and Noy, N. F. and Musen, M. A. and Brinkley, James F and Rosse, Cornelius (2001) Representation of Structural Relationships in the Foundational Model of Anatomy.

Lober, W. B. and Brinkley, James F (2000) XML-Based Image Annotation: PAIS - a Personal Annotated Image Server.

Hahn, J. S. and Burnside, E. and Brinkley, James F and Rosse, Cornelius and Musen, M. A. (1999) Representing the Digital Anatomist Foundational Model as a Protege Ontology.

Lober, W. B. and Brinkley, James F (1999) A Portable Image Annotation Tool for Web-Based Anatomy Atlases.

Wong, B. A. and Brinkley, James F (1998) Dynamic 3-D Scene Navigation in Web-Based Anatomy Atlases.

Jakobovits, Rex M and Brinkley, James F (1998) Query-by-Context: A Framework for Modelling and Navigating Multimedia Research Data.

Brinkley, James F and Eno, Kraig R and Sundsten, John W and Conley, D. M. and Rosse, Cornelius (1995) A Distributed Framework for Distance Learning in Anatomy: The Digital Anatomist Interactive Atlas.

Conley, D. M. and Sundsten, John W and Ratiu, P. and Rauschning, Wolfgang and Rosse, Cornelius (1995) The Digital Anatomist Series: 3-D, Segmented, Dynamic Atlases of Body Regions.

Hinshaw, Kevin P and Altman, R. B. and Brinkley, James F (1995) Shape-Based Models for Interactive Segmentation of Medical Images.

This list was generated on Fri Apr 25 00:01:19 PDT 2014.