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Publications

Publication Type: Journal (Paginated)

Number of items: 55.

Brinkley, James F. and Detwiler, Landon T. (2012) A Query Integrator and Manager for the Query Web.

Shaw, Marianne and Detwiler, Landon T and Noy, N. F. and Brinkley, James F and Suciu, Dan (2011) vSPARQL: A View Definition Language for the Semantic Web.

Turner, Jessica A and Mejino, Jose L V and Brinkley, James F and Detwiler, Landon T and Lee, Hyo Jong and Martone, Maryann E and Rubin, Daniel L (2010) Application of neuroanatomical ontologies for neuroimaging data annotation.

Shen, Terry H and Detwiler, Landon T and Tarczy-Hornoch, Peter and Cadag, Eithon and Carlson, Christopher S (2010) Evaluation of probabilistic and logical inference for a SNP annotation system.

Detwiler, Landon T and Suciu, Dan and Franklin, Joshua D and Moore, Eider B and Poliakov, Andrew W and Lee, E Sally and Corina, David P and Ojemann, George A and Brinkley, James F (2009) Distributed XQuery-based integration and visualization of multimodality data: Application to brain mapping. .

Gu, Huanying and Wei, Duo and Mejino, Jose L V and Elhanan, Gai (2009) Relationship auditing of the FMA ontology.

Kalet, Ira and Mejino, Jose L V and Wang, Vania and Whipple, Mark and Brinkley, James F (2009) Content-specific auditing of a large scale anatomy ontology.

Poliakov, Andrew V and X., Hertzenberg and Moore, Eider B and Corina, David P and Ojemann, George A and Brinkley, James F (2008) Unobtrusive Integration of Data Management With fMRI Analysis.

Smith, Barry and Ashburner, Michael and Rosse, Cornelius and Bard, Jonathan and Bug, William and Ceusters, Werner and Goldberg, Louis J and Eilbeck, Karen and Ireland, Amelia and Mungall, Christopher J and OBI Consortium, The and Leontis, Neocles and Rocca‐Serra, a b and Ruttenberg, Alan and Sansone, Susanna-Assunta and Shah, Migam and Whetzel, Patricia L and Lewissi, Suzanna (2007) The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration.

Moore, Eider B and Poliakov, Andrew V and Lincoln, Peter and Brinkley, James F (2007) MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data.

Anderson, Nicholas R and Lee, E. Sally and Brockenbrough, J Scott and Minie, Mark E and Fuller, Sherrilynne and Brinkley, James F and Tarczy-Hornoch, Peter (2007) Issues in biomedical research data management and analysis: needs and barriers.

Donnelly, Maureen and Bittner, Thomas and Rosse, Cornelius (2006) A formal theory for spatial representation and reasoning in biomedical ontologies.

Corina, David P and Gibson, Erin K. and Martin, Richard F and Poliakov, Andrew V and Brinkley, James F and Ojemann, George A (2005) Dissociation of Action and Object Naming: Evidence From Cortical Stimulation Mapping.

Shapiro, Linda G and Chung, Emily and Detwiler, Landon T and Mejino, Jose L V and Agoncillo, Augusto V and Brinkley, James F and Rosse, Cornelius (2005) Processes and Problems in the Formative Evaluation of an Interface to the Foundational Model of Anatomy Knowledge Base.

Poliakov, Andrew V and Albright, Evan M and Hinshaw, Kevin P and Corina, David P and Martin, Richard F and Brinkley, James F (2005) Server-based Approach to Web Visualization of Integrated Three-dimensional Brain Imaging Data.

Smith, Barry and Ceusters, Werner and Klagges, Bert and Köhler, Jacob and Kumar, Anand and Lomax, Jane and Mungall, Chris and Neuhaus, Fabian and Rector, Alan L and Rosse, Cornelius (2005) Relations in biomedical ontologies.

Smith, Barry and Kumar, Anand and Ceusters, Werner and Rosse, Cornelius (2005) On carcinomas and other pathological entities.

Noy, N. F. and Musen, M. A. and Mejino, Jose L V and Rosse, Cornelius (2004) Pushing the Envelope: Challenges in a Frame-Based Representation of Human Anatomy.

Kim, S. and Brinkley, James F and Rosse, Cornelius (2003) Profile of On-Line Anatomy Information Resources: Design and Instructional Implications.

Rosse, Cornelius and Mejino, Jose L V (2003) A Reference Ontology for Bioinformatics: The Foundational Model of Anatomy.

Mork, Peter and Brinkley, James F and Rosse, Cornelius (2003) OQAFMA Querying Agent for the Foundational Model of Anatomy: a Prototype for Providing Flexible and Efficient Access to Large Semantic Networks.

Brinkley, James F and Rosse, Cornelius (2002) Imaging Informatics and the Human Brain Project: the Role of Structure, Review.

Brinkley, James F and Rosse, Cornelius (2002) Imaging and the Human Brain Project: a Review.

Jakobovits, Rex M and Rosse, Cornelius and Brinkley, James F (2002) WIRM: An open source toolkit for building biomedical web applications.

Hinshaw, Kevin P and Poliakov, Andrew V and Martin, Richard F and Moore, Eider B and Shapiro, Linda G and Brinkley, James F (2002) Shape-Based Cortical Surface Segmentation for Visualization Brain Mapping.

Jakobovits, Rex M and Rosse, Cornelius and Brinkley, James F (2002) WIRM: an Open Source Toolkit for Building Biomedical Web Applications .

Kinbar, K. and Hill, J. and Martin, Richard F and Mulligan, K. and Poliakov, Andrew V and Brinkley, James F and Lettich, E. and Ojemann, George A and Corina, David P (2002) Naming Deficits During Cortical Stimulation Mapping: Functional Specificity Reconsidered.

Poliakov, Andrew V and Albright, Evan M and Corina, David P and Ojemann, George A and Martin, Richard F and Brinkley, James F (2002) Server-Based Approach to Web Visualization of Integrated 3-D Medical Image Data.

Corina, David P and Steury, K. and Poliakov, Andrew V and Martin, Richard F and Mulligan, K. A. and Maravilla, K. and Lettich, E. and Brinkley, James F and Inuoe, K. and Ojemann, George A (2001) A Comparison of Language Function Derived from Cortical Stimulation Mapping and FMRI: Data from Object Naming.

Jakobovits, Rex M (2000) WIRM: A Perl-Based Application Server.

Rosse, Cornelius (2000) Terminologia Anatomica; Considered from the Perspective of Next-Generation Knowledge Sources.

Brinkley, James F and Wong, B. A. and Hinshaw, Kevin P and Rosse, Cornelius (1999) Design of an Anatomy Information System.

Corina, David P and McBurney, S. L. and Dodrill, C. and Hinshaw, Kevin P and Brinkley, James F and Ojemann, George A (1999) Functional Roles of Broca's Area and SMG: Evidence from Cortical Stimulation Mapping in a Deaf Signer.

Rosse, Cornelius (1999) Anatomy Atlases.

Rosse, Cornelius and Mejino, Jose L V and Modayur, Bharath R and Jakobovits, Rex M and Hinshaw, Kevin P and Brinkley, James F (1998) Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base.

Brinkley, James F and Bradley, S. W. and Sundsten, John W and Rosse, Cornelius (1997) The Digital Anatomist Information System and Its Use in the Generation and Delivery of Web-Based Anatomy Atlases.

Brinkley, James F and Prothero, J. S. (1997) Slisp: A Flexible Software Toolkit for Hybrid, Embedded and Distributed Applications.

Brinkley, James F and Bradley, S. W. and Sundsten, John W and Rosse, Cornelius (1997) The Digital Anatomist Information System and Its Use in the Generation and Delivery of Web-Based Anatomy Atlases.

Brinkley, James F and Rosse, Cornelius (1997) The Digital Anatomist Distributed Framework and Its Applications to Knowledge Based Medical Imaging.

Modayur, Bharath R and Prothero, J. and Ojemann, George A and Maravilla, K. and Brinkley, James F (1997) Visualization-Based Mapping of Language Function in the Brain.

Dailey, D. J. and Brinkley, James F (1996) A Metric for Quantifying Response Time in a Browser Application.

Jakobovits, Rex M and Lewis, L. M. and Ahrens, J. P. and Shapiro, Linda G and Tanimoto, S. L. and Brinkley, James F (1996) A Visual Database Environment for Scientific Research.

Graney, D. and Conley, D. and Sundsten, John W and Ratiu, P. and Rauschning, Wolfgang and Brinkley, James F and Rosse, Cornelius (1995) Digital Anatomist Interactive Atlases.

Rosse, Cornelius (1995) The Potential of Computerized Representations of Anatomy in the Training of Health Care Providers.

Brinkley, James F and Eno, Kraig R and Sundsten, John W (1993) Knowledge-Based Client-Server Approach to Structural Information Retrieval: The Digital Anatomist Browser.

Brinkley, James F (1993) A Flexible, Generic Model for Anatomic Shape: Application to Interactive Two-Dimensional Medical Image Segmentation and Matching.

Conley, D. M. and Kastella, K. G. and Sundsten, John W and Rauschning, Wolfgang and Rosse, Cornelius (1992) Computer-Generated Three-Dimensional Reconstruction of the Mediastinum Correlated with Sectional and Radiological Anatomy.

Sundsten, John W and Kastella, K. G. and Conley, D. M. (1991) Videodisc Animation of 3d Computer Reconstructions of the Human Brain.

Brinkley, James F (1991) Structural Informatics and Its Applications in Medicine and Biology.

Stimac, G. K. and Sundsten, John W and Prothero, J. S. and Prothero, John W and Gerlach, R. and Sorbonne, R. (1988) Three-Dimensional Contour Surfacing of the Skull, Face, and Brain from CT and MR Images and from Anatomic Sections.

Brinkley, James F and Altman, R. B. and Duncan, B. S. and Buchanan, B. G. and Jardetzky, O. (1988) Heuristic Refinement Method for the Derivation of Protein Solution Structures: Validation on Cytochrome B562.

Prothero, J. S. and Prothero, John W (1986) Three-Dimensional Reconstruction from Serial Sections IV. The Reassembly Problem.

Prothero, J. S. and Riggins, M. and Lindsay, A. and Harris, R. and Prothero, John W (1985) Three-Dimensional Reconstruction from Serial Sections III. Autoscan, a Software Package in Fortran for Semiautomated Photomicrography.

Sundsten, John W and Prothero, John W (1983) Three-Dimensional Reconstruction from Serial Sections: II. A Microcomputer-Based Facilty for Rapid Data Collection.

Prothero, J. S. and Prothero, John W (1982) Three-Dimensional Reconstruction from Serial Sections: I. A Portable Microcomputer-Based Software Package in Fortran..

This list was generated on Sat Nov 22 19:01:19 PST 2014.